View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14895_high_12 (Length: 227)

Name: NF14895_high_12
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14895_high_12
NF14895_high_12
[»] chr4 (19 HSPs)
chr4 (1-217)||(3671286-3671502)
chr4 (70-204)||(55636898-55637032)
chr4 (70-208)||(52983286-52983424)
chr4 (71-204)||(54861185-54861318)
chr4 (71-204)||(54629891-54630024)
chr4 (70-204)||(55663993-55664127)
chr4 (4-69)||(55619242-55619307)
chr4 (4-69)||(55626546-55626611)
chr4 (4-69)||(55657592-55657657)
chr4 (70-204)||(55619406-55619540)
chr4 (70-204)||(55626710-55626844)
chr4 (70-204)||(55657756-55657890)
chr4 (1-69)||(54630127-54630195)
chr4 (1-63)||(54861015-54861077)
chr4 (4-61)||(55663823-55663880)
chr4 (7-55)||(52983122-52983170)
chr4 (1-69)||(55637131-55637199)
chr4 (154-204)||(51316255-51316305)
chr4 (115-204)||(50190412-50190501)
[»] chr8 (2 HSPs)
chr8 (71-204)||(9891185-9891318)
chr8 (1-72)||(9891426-9891497)
[»] chr2 (2 HSPs)
chr2 (70-203)||(13403306-13403439)
chr2 (2-69)||(13403538-13403605)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 3671286 - 3671502
Alignment:
Q  1 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaatactcgatttgctcatgggtactgccagat 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671286 agtaacaatttttggatcagagcaaacgagcaaatcacacagaggcttaatgcaaccctggctcgccaaatactcgatttgctcatgggtactgccagat 3671385  T
Q  101 gtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671386 gtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacag 3671485  T
Q  201 cctgtatctgctctctg 217  Q
    ||||||||| |||||||    
T  3671486 cctgtatctactctctg 3671502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 55637032 - 55636898
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||||| ||||| |||  | |||||||||| ||||||||||||||||||||     
T  55637032 atacttgatttgctcatgggtaccaccagatgtaacattaaagagtgcccatgcagcttcttttgcaatgtcaaactcggcattttgaagaagattgact 55636933  T
Q  170 agaggggcaatcagaccagcttcaataacagcctg 204  Q
    || ||||||||||||| ||||||||||||||||||    
T  55636932 aggggggcaatcagactagcttcaataacagcctg 55636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 52983286 - 52983424
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| |||||||||| ||||||  | | | ||||||||||||||||||||||| ||||| |||  | |||||||||| |||| |||||||||||||||     
T  52983286 atacttgatttgctcaggggtaccactaaacgtagcattagagagtgcccatgcagcttcttttttaatgtcaaactcggcatattgaagaagattgact 52983385  T
Q  170 agaggggcaatcagaccagcttcaataacagcctgtatc 208  Q
    || || |||||||||||||||||||||||||||||||||    
T  52983386 aggggagcaatcagaccagcttcaataacagcctgtatc 52983424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 54861185 - 54861318
Alignment:
Q  71 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 170  Q
    |||| ||||||||| |||||||  || ||||||||||||| |||||||||||| ||||| |||  | |||||||||| |||||||||||||||||||| |    
T  54861185 tacttgatttgctcgtgggtaccacctgatgtagcattagtgagtgcccatgcagcttcttttttaatgtcaaactcagcattttgaagaagattgacta 54861284  T
Q  171 gaggggcaatcagaccagcttcaataacagcctg 204  Q
    | || ||||||| |||||||||||| ||||||||    
T  54861285 ggggagcaatcaaaccagcttcaatgacagcctg 54861318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 54630024 - 54629891
Alignment:
Q  71 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 170  Q
    |||| ||| ||||| |||||||  ||||||||| |||||| |||||||  |||  ||||||||  | |||||||||| |||||||||||||||||||| |    
T  54630024 tacttgatatgctcgtgggtaccaccagatgtaacattagtgagtgcctgtgcaacttcctttgtaatgtcaaactctgcattttgaagaagattgacta 54629925  T
Q  171 gaggggcaatcagaccagcttcaataacagcctg 204  Q
    | || |||||||||||||||||||||||||||||    
T  54629924 ggggagcaatcagaccagcttcaataacagcctg 54629891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 55663993 - 55664127
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| ||||||||||||||||| |||||||||||||||| | | ||||||||| ||||| |||  |   ||||| || ||||||||||||||||| ||     
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcattaaataatgcccatgcagcttctttttgaacttcaaaatcggcattttgaagaagatttact 55664092  T
Q  170 agaggggcaatcagaccagcttcaataacagcctg 204  Q
    || || ||||| |||||||||||||||||||||||    
T  55664093 aggggagcaattagaccagcttcaataacagcctg 55664127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 55619242 - 55619307
Alignment:
Q  4 aacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55619242 aacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55619307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 55626546 - 55626611
Alignment:
Q  4 aacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55626546 aacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55626611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 55657592 - 55657657
Alignment:
Q  4 aacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  55657592 aacaatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaaccatggctcaccaa 55657657  T

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Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 55619406 - 55619540
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55619406 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55619505  T
Q  170 agaggggcaatcagaccagcttcaataacagcctg 204  Q
    || || ||||||||||||||||  |||||||||||    
T  55619506 aggggagcaatcagaccagctttgataacagcctg 55619540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 55626710 - 55626844
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||| ||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55626710 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcacatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55626809  T
Q  170 agaggggcaatcagaccagcttcaataacagcctg 204  Q
    || || ||||||||||||||||| |||||||||||    
T  55626810 aggggagcaatcagaccagcttcgataacagcctg 55626844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 55657756 - 55657890
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| |||  | |  ||| ||| ||||||||||||||||||||     
T  55657756 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttttaatcgcaagctcggcattttgaagaagattgact 55657855  T
Q  170 agaggggcaatcagaccagcttcaataacagcctg 204  Q
    || || ||||||||||||||||  |||||||||||    
T  55657856 aggggagcaatcagaccagctttgataacagcctg 55657890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54630195 - 54630127
Alignment:
Q  1 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    |||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  54630195 agtaactattcttggatcagggcaaactagcaaatcacacagaggcttaatgcaaccctggctcaccaa 54630127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 54861015 - 54861077
Alignment:
Q  1 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggct 63  Q
    |||||||||| ||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  54861015 agtaacaattcttggatcagggcaaaccatcaaatcacacagaggcttaatgcaaccctggct 54861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 55663823 - 55663880
Alignment:
Q  4 aacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctgg 61  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  55663823 aacaattgttggatcagggcaaacaagcaaatcacacagaggtttaatgcaaccctgg 55663880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 52983122 - 52983170
Alignment:
Q  7 aatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaa 55  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52983122 aatttttggatcagggcaaacaagcaaatcacacagaggcttaatgcaa 52983170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 55637199 - 55637131
Alignment:
Q  1 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    |||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||| |||||| ||||    
T  55637199 agtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaaccttggctctccaa 55637131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 51316305 - 51316255
Alignment:
Q  154 ttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 204  Q
    ||||||||||| |||||| || ||||| |||||||||||||||||||||||    
T  51316305 ttgaagaagatcgaccaggggagcaatgagaccagcttcaataacagcctg 51316255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 50190412 - 50190501
Alignment:
Q  115 tgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgaccagaggggcaatcagaccagcttcaataacagcctg 204  Q
    ||||||||| ||||| |||  | |||||||||| ||||||||||||||  |||| || || ||||| ||||| || ||||||||||||||    
T  50190412 tgcccatgcagcttcttttttaatgtcaaactctgcattttgaagaagtctgacaagtggagcaataagaccggcatcaataacagcctg 50190501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 9891318 - 9891185
Alignment:
Q  71 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacca 9891219  T
Q  171 gaggggcaatcagaccagcttcaataacagcctg 204  Q
    ||||||||||||||||||||||||||||||||||    
T  9891218 gaggggcaatcagaccagcttcaataacagcctg 9891185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 9891497 - 9891426
Alignment:
Q  1 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaata 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891497 agtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaaata 9891426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 13403439 - 13403306
Alignment:
Q  70 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttaaagtgtcaaactccgcattttgaagaagattgacc 169  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||  | ||||||| || |||||||||||||||||||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtgcccatgcagcttcttttttaatgtcaaattcggcattttgaagaagattgacc 13403340  T
Q  170 agaggggcaatcagaccagcttcaataacagcct 203  Q
    ||||| |||||||| || ||||||||||||||||    
T  13403339 agaggagcaatcagtccggcttcaataacagcct 13403306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 13403605 - 13403538
Alignment:
Q  2 gtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaaccctggctcgccaa 69  Q
    ||||||||| ||||||| | ||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  13403605 gtaacaattcttggatcggggcaaacaagaagatcacacagaggcttaatgcaaccctggctcaccaa 13403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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