View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14895_high_2 (Length: 524)
Name: NF14895_high_2
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Original strand, 31147441 - 31147934
Alignment:
| Q |
15 |
taaataaaacttccattaatatttcatcacttttcatcttttccttgagttgcttaaacaagacagtagcagaaaagtacaaaaatgcatactatagtcc |
114 |
Q |
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| T |
31147441 |
taaataaaacttccattaatatttcatcacttttcatcttttccttgagttgcttaaacaagacagtagcagaaaagtacaaaaatgcatactatagtcc |
31147540 |
T |
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| Q |
115 |
aagaatggaaggtatgaagagtagctatctagaatacaacattctaataacatggtaatatatcgtctgagactctgagtacaatggatatacaagttgt |
214 |
Q |
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| T |
31147541 |
aagaat--aaggtatgaagagtagctatctagaatacaacattctaataacatggtaatatatcgtctgagactctgagtacaatggatatacaagttgt |
31147638 |
T |
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| Q |
215 |
agttgtgcctcatcttcaatttccagaaacttgcacttccgagctaaggaatttcggcagtaatgcatgattttgtttatttacccagtgatacccacaa |
314 |
Q |
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| T |
31147639 |
agttgtgcctcatcttcaatttccagaaacttgcacttccgagctaaggaatttcggcagtaatgcatgattttgtttatttacccagtgatacccacaa |
31147738 |
T |
|
| Q |
315 |
ctctgcacctttgtatgcagacctttggggttcataatgctaaatttcattctgaaattatcaagattctcgagagtttcgtctataaacttgagtatat |
414 |
Q |
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| T |
31147739 |
ctctgcacctttgtatgcagacctttggggttcataatgctaaatttcattctgaaattatcaagattctcgagagtttcgtctataaacttgagtatat |
31147838 |
T |
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| Q |
415 |
taaagaatgattccagaggaaagtagattaggcacatgtggtctgatttaacctcaataagatatctctcaagacttactgaaatgatgccatacc |
510 |
Q |
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| T |
31147839 |
taaagaatgattccagaggaaagtagattaggcacatgtggtctgatttaacctcaataagatatctctcaagacttactgaaatgatgccatacc |
31147934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 31156546 - 31156599
Alignment:
| Q |
216 |
gttgtgcctcatcttcaatttccagaaacttgcacttccgagctaaggaatttc |
269 |
Q |
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| T |
31156546 |
gttgtgcctcatcttcaattgccaaaaacttgcgcttccgagctacagaatttc |
31156599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 31504854 - 31504795
Alignment:
| Q |
210 |
gttgtagttgtgcctcatcttcaatttccagaaacttgcacttccgagctaaggaatttc |
269 |
Q |
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| T |
31504854 |
gttgttgttgtgcctcatcttcaatttccaaaaatttgcgctttcctgctaaggaatttc |
31504795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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