View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14895_high_3 (Length: 383)
Name: NF14895_high_3
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 4330935 - 4331295
Alignment:
| Q |
7 |
atgaatcaggaagtgcaccactgtgttggtttccttgaagttctaaagttttcaagttttgaagatttgagatgatttgaggaatttctccttgtagaat |
106 |
Q |
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| T |
4330935 |
atgaatcaggaagtgcaccactgagttggtttccttgaagttctaaagttttcaagttttgaagatttgagatgatttgaggaatttctccttgtagaat |
4331034 |
T |
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| Q |
107 |
gttactactcaaatcaagttggacaagagttgtactgagattggagaaccatgaaaggatttcatgattgagattgttatttgaaagatcaaggacttgg |
206 |
Q |
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| T |
4331035 |
gttactactcaaatcaagttggacaagagttgtacttagattggagaaccatgaaaggatttcatgattgagattgttatttgaaagatcaaggacttgg |
4331134 |
T |
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| Q |
207 |
agatttgtgaaatttgttttccttgctgcttctatgttatcaatttggcaattttccaaatgtaattttaaaagagaaggaagtgaattactcaatagtt |
306 |
Q |
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| T |
4331135 |
agatttgtgaaatttgttttccttgttgcttctatgttatcaagttggcaattttccaaatgtaattttaaaagagaaggaagtgaattactcaatagtt |
4331234 |
T |
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| Q |
307 |
caaaccagtttgtttcattataaaggtctacaccacttaaatcaagatgttctaacgaagg |
367 |
Q |
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| T |
4331235 |
caaaccagtttgtttcattataaaggtctacaccacttaaatcaagatgttctaacgaagg |
4331295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 4497035 - 4496668
Alignment:
| Q |
7 |
atgaatcaggaagtgcaccactgtgttggtttccttgaagttctaa----agt-tttcaagttttgaagatttgagatgatttgaggaatttctccttgt |
101 |
Q |
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||||||||||||||||||||||| ||||||||| |||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4497035 |
atgaatcaggaagtgcaccactgagttggtttctttgaaggtctaattaaagtcttttaagttttgaagatttgagatgatttgaggaatttctccttgt |
4496936 |
T |
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| Q |
102 |
agaatgttactactcaaatcaagttggacaagagtt--gtactgagattggagaaccatgaaaggatttcatgattgagattgttatttgaaagatcaag |
199 |
Q |
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|||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4496935 |
agaaagttactaatcaaatcaagttggacaagagttttgtacttagattggagaaccatgaagggatttcatgattgagattgttatttgaaagatcaaa |
4496836 |
T |
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| Q |
200 |
gacttggagatttgtgaaatttgttttccttgctgcttctatgttatcaatttggcaattttccaaatgtaattttaaaagagaaggaagtgaattactc |
299 |
Q |
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| T |
4496835 |
gacttggagatttgtgaaatttgttttcattgctggttttatgttatcaatttagcaattttccaaatgtaattctaaaagagaaggaattgaattactc |
4496736 |
T |
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| Q |
300 |
aatagttcaaaccagtttgtttcattataaaggtctacaccacttaaatcaagatgttctaacgaagg |
367 |
Q |
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| T |
4496735 |
aatagttcaaaccaatctgtttctttttgaaggtctacaccacttaaatcaaagtgttctaaagaagg |
4496668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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