View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14895_high_5 (Length: 320)
Name: NF14895_high_5
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 3383195 - 3383497
Alignment:
| Q |
7 |
aaaactacatcttgagcagtgaaaatgtgaacactttagctccatttgatccaaatgaagaacatagcactgcaatagatcaggtttaaacataggatat |
106 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3383195 |
aaaactacatcttgagcggtgaaaatgtgaacactttagctccatttgatccaaatgaagaacatagcactgcaatagatcaggtttaaacataggatat |
3383294 |
T |
|
| Q |
107 |
attttttatttatttccatttcagtatttataccataaattaatgtttatctccctgtgtatttgtcgtgtgagcaaggttattttaggaagaatgaata |
206 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3383295 |
attttttatttatttccatttcagtatttatactataaattaatgtttatctccctgtgtatttgtcgtgtgagcaaggttattttaggaagaatgaata |
3383394 |
T |
|
| Q |
207 |
tggtactataaacaatttagctcccttgaatccaaatcaagaacattttgctaaagtaaaaaagt----gatagagtaaggatagggaagaaggagtact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
3383395 |
tggtactataaacaatttagctcccttgaatccaaatcaagaacattttgctaaagtaaacaagtgatagatagagtaaggatagggaagaaggagtact |
3383494 |
T |
|
| Q |
303 |
ttc |
305 |
Q |
| |
|
||| |
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|
| T |
3383495 |
ttc |
3383497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 42632940 - 42632896
Alignment:
| Q |
222 |
tttagctcccttgaatccaaatcaagaacattttgctaaagtaaa |
266 |
Q |
| |
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|||| ||||||| |||||||||||||||||||||| | ||||||| |
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|
| T |
42632940 |
tttaactcccttcaatccaaatcaagaacattttggtcaagtaaa |
42632896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 8532533 - 8532270
Alignment:
| Q |
7 |
aaaactacatcttgagcagtgaaaatgtgaacactttagctccatttgatccaaatgaagaacatagcactgcaatagatcaggtttaaacataggatat |
106 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
8532533 |
aaaactacatcttgagcagtgaaaatgtgaacactttagctccatttgatcgaaatgaagaacatagcagtgcaataaatcaggtttaaacataggatat |
8532434 |
T |
|
| Q |
107 |
attttttatttatttccatttcagtatttataccataaattaatgtttatctccctgtgtatttgtcgtgtgagcaaggttattt----taggaagaatg |
202 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
8532433 |
atgttttatttatatccatttcagtatttataccataaattaatgtttatctccctgtgtatttgtagtgtgagcaaggttattttagctaggaagaatg |
8532334 |
T |
|
| Q |
203 |
aatatggtactataaacaatttagctcccttgaatccaaatcaagaacattttgctaaagtaaa |
266 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
8532333 |
gatatggtactataaacaatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa |
8532270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 49962433 - 49962477
Alignment:
| Q |
222 |
tttagctcccttgaatccaaatcaagaacattttgctaaagtaaa |
266 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | ||||||| |
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|
| T |
49962433 |
tttagctcccttcaatccaaatcaagaacattttggtcaagtaaa |
49962477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 38176560 - 38176516
Alignment:
| Q |
222 |
tttagctcccttgaatccaaatcaagaacattttgctaaagtaaa |
266 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | ||||||| |
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|
| T |
38176560 |
tttagctcccttcaatccaaatcaagaacattttggtcaagtaaa |
38176516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 39676786 - 39676746
Alignment:
| Q |
226 |
gctcccttgaatccaaatcaagaacattttgctaaagtaaa |
266 |
Q |
| |
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|||||||| |||||||||||||||||||||| | ||||||| |
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|
| T |
39676786 |
gctcccttcaatccaaatcaagaacattttggtcaagtaaa |
39676746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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