View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14895_high_8 (Length: 288)
Name: NF14895_high_8
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 49111597 - 49111864
Alignment:
| Q |
14 |
aatccaactatggattttgagatacaatcgtctaagcnnnnnnn-ttgttgagtgataatgaatggtgcaattcaatattatctttctcataagctcatc |
112 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49111597 |
aatccaactatggattttgagatacaaccgtctaagcaaaaaaaattgttgagtgataatgaatggtgcaattcaatattatctttctcataagctcatc |
49111696 |
T |
|
| Q |
113 |
aacaatgttataattattgtttaaa-gagaatatgtattaatattctatcattgttgagaaaaaccgagccatttggtggttgttgtggccattcttaac |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49111697 |
aacaatgttataattattgtttaaaagagaatatgtattcatattctatcattgttgagaaaaaccgagccatttggtggttgttgtggccattcttaac |
49111796 |
T |
|
| Q |
212 |
catggatttgagcaactttttcttcgttaggcttaccatcgtgagggtgactccaattcctcgtctgt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
49111797 |
catggatttgagcaactttttcttcgttaggcttaccatcgtgaggatgactccaattcctcatctgt |
49111864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University