View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14895_high_9 (Length: 255)

Name: NF14895_high_9
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14895_high_9
NF14895_high_9
[»] chr5 (24 HSPs)
chr5 (1-241)||(33487288-33487530)
chr5 (130-241)||(4064921-4065032)
chr5 (1-89)||(5978362-5978450)
chr5 (185-241)||(15957614-15957670)
chr5 (18-96)||(12970801-12970879)
chr5 (185-241)||(1350465-1350522)
chr5 (188-241)||(38871538-38871591)
chr5 (4-59)||(1360436-1360491)
chr5 (185-236)||(20891476-20891527)
chr5 (18-96)||(8406616-8406694)
chr5 (19-91)||(1664458-1664530)
chr5 (185-241)||(24203881-24203937)
chr5 (17-96)||(4765830-4765909)
chr5 (18-97)||(6091436-6091515)
chr5 (18-96)||(18411931-18412009)
chr5 (184-241)||(28445614-28445672)
chr5 (208-241)||(6156618-6156651)
chr5 (18-91)||(11855926-11855999)
chr5 (19-96)||(14207093-14207170)
chr5 (184-240)||(16428921-16428978)
chr5 (185-241)||(26318981-26319038)
chr5 (204-241)||(27212591-27212628)
chr5 (18-91)||(27481084-27481157)
chr5 (19-91)||(27480738-27480810)
[»] chr4 (16 HSPs)
chr4 (130-241)||(55052820-55052931)
chr4 (130-241)||(25539149-25539259)
chr4 (1-96)||(30969895-30969990)
chr4 (185-241)||(38536080-38536136)
chr4 (188-241)||(6229012-6229066)
chr4 (18-90)||(12765105-12765177)
chr4 (184-241)||(3703451-3703509)
chr4 (188-241)||(34972786-34972840)
chr4 (18-96)||(39730564-39730642)
chr4 (188-241)||(41413276-41413330)
chr4 (18-97)||(43722989-43723068)
chr4 (188-241)||(6003874-6003928)
chr4 (203-241)||(32441739-32441777)
chr4 (19-97)||(41859318-41859396)
chr4 (18-91)||(41744492-41744565)
chr4 (190-241)||(38416479-38416531)
[»] chr1 (23 HSPs)
chr1 (1-89)||(41967449-41967537)
chr1 (185-241)||(17000281-17000337)
chr1 (130-241)||(34162923-34163030)
chr1 (185-241)||(24471505-24471562)
chr1 (188-241)||(18583745-18583799)
chr1 (5-89)||(19071590-19071677)
chr1 (5-89)||(19119480-19119567)
chr1 (18-91)||(25789491-25789564)
chr1 (18-98)||(25473976-25474056)
chr1 (18-97)||(52630495-52630574)
chr1 (188-241)||(27794759-27794813)
chr1 (188-241)||(30829656-30829710)
chr1 (18-91)||(32202584-32202657)
chr1 (18-97)||(8331736-8331815)
chr1 (17-96)||(46666431-46666510)
chr1 (184-241)||(9446259-9446317)
chr1 (203-241)||(32542326-32542364)
chr1 (18-96)||(47031582-47031660)
chr1 (18-91)||(1228150-1228223)
chr1 (18-91)||(9115565-9115638)
chr1 (18-91)||(47677372-47677445)
chr1 (123-175)||(3470162-3470214)
chr1 (184-223)||(49786911-49786951)
[»] chr7 (16 HSPs)
chr7 (17-97)||(48313843-48313923)
chr7 (1-43)||(19156312-19156354)
chr7 (1-43)||(20755711-20755753)
chr7 (184-241)||(24042389-24042446)
chr7 (17-97)||(28904456-28904536)
chr7 (19-91)||(30686263-30686335)
chr7 (19-91)||(37534374-37534446)
chr7 (18-97)||(11329714-11329793)
chr7 (185-241)||(16278002-16278060)
chr7 (190-241)||(28230668-28230719)
chr7 (18-97)||(45265319-45265398)
chr7 (188-241)||(47202398-47202452)
chr7 (18-90)||(25097796-25097869)
chr7 (18-91)||(27419495-27419568)
chr7 (208-241)||(42925842-42925875)
chr7 (19-91)||(31598450-31598522)
[»] chr6 (18 HSPs)
chr6 (1-87)||(30062427-30062512)
chr6 (18-96)||(2325114-2325192)
chr6 (1-89)||(21802710-21802801)
chr6 (189-241)||(5699464-5699516)
chr6 (189-241)||(24604564-24604617)
chr6 (138-241)||(4508503-4508600)
chr6 (185-238)||(5638780-5638834)
chr6 (18-91)||(16968652-16968725)
chr6 (185-241)||(33413547-33413604)
chr6 (192-240)||(1945732-1945780)
chr6 (188-240)||(2813428-2813480)
chr6 (18-90)||(21008250-21008322)
chr6 (18-97)||(18897642-18897721)
chr6 (130-241)||(23406648-23406754)
chr6 (18-96)||(2657422-2657500)
chr6 (3-37)||(33791504-33791538)
chr6 (132-241)||(3717484-3717592)
chr6 (18-91)||(14170742-14170815)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-89)||(59138-59229)
[»] chr3 (24 HSPs)
chr3 (184-241)||(33700657-33700715)
chr3 (189-241)||(47301924-47301977)
chr3 (185-241)||(8735073-8735129)
chr3 (185-241)||(9087314-9087370)
chr3 (190-241)||(28872910-28872961)
chr3 (17-91)||(6927818-6927892)
chr3 (188-241)||(43473150-43473204)
chr3 (188-241)||(52777145-52777199)
chr3 (188-241)||(2358824-2358879)
chr3 (18-98)||(46359672-46359752)
chr3 (18-97)||(11239391-11239470)
chr3 (202-241)||(42936588-42936627)
chr3 (18-96)||(26848744-26848822)
chr3 (203-241)||(30722011-30722049)
chr3 (18-96)||(33218184-33218262)
chr3 (188-241)||(48303895-48303949)
chr3 (188-241)||(51258307-51258361)
chr3 (208-241)||(3903007-3903040)
chr3 (18-91)||(9320720-9320793)
chr3 (185-241)||(42937146-42937203)
chr3 (18-91)||(43719196-43719269)
chr3 (188-241)||(50716157-50716210)
chr3 (188-241)||(50796637-50796690)
chr3 (19-91)||(26849417-26849489)
[»] chr8 (9 HSPs)
chr8 (18-97)||(16313778-16313857)
chr8 (130-241)||(37248407-37248516)
chr8 (18-91)||(18297839-18297912)
chr8 (133-241)||(16310451-16310557)
chr8 (18-97)||(35818695-35818774)
chr8 (18-96)||(7930961-7931039)
chr8 (188-241)||(21004294-21004348)
chr8 (18-91)||(10896487-10896560)
chr8 (18-91)||(38363808-38363881)
[»] chr2 (10 HSPs)
chr2 (186-241)||(15995310-15995365)
chr2 (18-97)||(37192243-37192322)
chr2 (185-241)||(34517002-34517059)
chr2 (18-97)||(2050587-2050666)
chr2 (188-241)||(5507320-5507374)
chr2 (18-96)||(14777769-14777847)
chr2 (188-241)||(25715267-25715321)
chr2 (18-91)||(5770381-5770454)
chr2 (18-91)||(9734117-9734190)
chr2 (18-91)||(17965710-17965783)
[»] scaffold0508 (1 HSPs)
scaffold0508 (185-241)||(3598-3654)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-97)||(201647-201727)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33487288 - 33487530
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctttnn 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||      
T  33487288 tttctcagtaaacccgagaataaaattctaatccttatattccaagaaaaattattgccagaattacattttataaacttcaaacaaacaccccttttaa 33487387  T
Q  101 nnnnntgaaccaaccttccttgataaatattagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttc--caaaaatgtcc 198  Q
         |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||         |||  |||||||||||    
T  33487388 aaaaatgaaccaaccttccttgataaatattagactattacttttcccaccctgtgggtttcctcgcgcgccctatttttttttttcttcaaaaatgtcc 33487487  T
Q  199 ttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  33487488 ttgagtttccggatttcataatccggaatggtgttttcctttg 33487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 4065032 - 4064921
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || |||||||        |||||||||||| |||||||||| |||||||||||||||| |||||    
T  4065032 ttagactattacttttcccacccagtgggtttcctcgcgcgccctattttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatgg 4064933  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  4064932 tgttttcctttg 4064921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5978450 - 5978362
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||   |||||| |||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||    
T  5978450 tttctcagtaaatttgagaatcaaattcccatccttatattcctaaaaaaattatttccagaattatattttataaacttgaaacaaac 5978362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 15957614 - 15957670
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||    
T  15957614 ttccaaaaatgcctttgagttttcggattttataatccgaaatggtgttttcttttg 15957670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 12970801 - 12970879
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| |||||||||| ||||    
T  12970801 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 12970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 1350522 - 1350465
Alignment:
Q  185 ttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  1350522 ttccaaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttg 1350465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38871538 - 38871591
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||    
T  38871538 caaaaatatccttgagttttcggattttataatccggaatggtgttttcttttg 38871591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 1360491 - 1360436
Alignment:
Q  4 ctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattccc 59  Q
    ||||||||| | | |||||||||||||||||||||||||  |||||||||||||||    
T  1360491 ctcagtaaatctgggaataaaattctcatccttatattcttagaaaaattattccc 1360436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 20891476 - 20891527
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttc 236  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||||||||||    
T  20891476 ttccaaaaatgcccttgagtatccggattttataatccgaaatggtgttttc 20891527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 8406694 - 8406616
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || |||| |||||||| |||||||||| ||||    
T  8406694 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 8406616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 1664530 - 1664458
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||| | || ||||  ||||||| ||||||||||    
T  1664530 aataaaattctcatctttatatttcaagaaatattattctcaggaataaatttggtaaacttgaaacaaacac 1664458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 24203937 - 24203881
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||||||| ||||||| |||||||| |||||||||||| ||||    
T  24203937 ttccaaaaatgccattgagtttccggattttataatccggaatggtgttttcttttg 24203881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 4765830 - 4765909
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  4765830 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 4765909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 6091515 - 6091436
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  6091515 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 6091436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18412009 - 18411931
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  18412009 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 18411931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 28445672 - 28445614
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||| ||||||||||| | |||||||| |  ||||||||||||    
T  28445672 cttccaaaaatgtccttgagattttcggattttaaaatccgaactaatgttttcctttg 28445614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 6156618 - 6156651
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  6156618 cggatttcataatccggaatggtgttttcctttg 6156651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11855926 - 11855999
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  11855926 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 11855999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 14207093 - 14207170
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||| |||||||||||  ||  ||||||| || | || ||||| ||||||| |||||||||| ||||    
T  14207093 aataaaattctcatctttatattccaatgaatgttattcctaggaataaattttgtaaacttgaaacaaacacaccct 14207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 16428921 - 16428978
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttccttt 240  Q
    |||||||||||||||||||| |||||  | || | |||||||||||||||||||||||    
T  16428921 cttccaaaaatgtccttgagattttcaaagtttaaaatccgaaatggtgttttccttt 16428978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 26318981 - 26319038
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||| | |||| |||||||||||| || |||||||||||||||||    
T  26318981 ttccaaaaatgcccttgcggtttccggatttcataattcggaatggtgttttcctttg 26319038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 27212591 - 27212628
Alignment:
Q  204 ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||||| || ||||||||||||    
T  27212591 ttttcggatttcataatccgaactgatgttttcctttg 27212628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 27481157 - 27481084
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  27481157 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 27481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27480810 - 27480738
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| ||||||| ||||||| |||||||| | || || ||||  ||||||| ||| ||||||    
T  27480810 aataaaattctcatctttatatttcaagaaatattattcctaaaaataaatttggtaaacttaaaataaacac 27480738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 55052931 - 55052820
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || ||||||         |||||||||||| |||||||||| |||||||||||||||| |||||    
T  55052931 ttagactattacttttcccacccagtgggtttcctcgcgcgcccttttttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatgg 55052832  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  55052831 tgttttcctttg 55052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 25539259 - 25539149
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||| |||||||||||||| |  |||||||         |||||||||||||| ||||||| |||||||||||||||| |||||    
T  25539259 ttagactattacttttcccagcatgtgggtttcctcgtgcgccctatttttttt-ttccaaaaatgtccctgagtttccggatttcataatccggaatgg 25539161  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  25539160 tgttttcctttg 25539149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30969895 - 30969990
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattc-caagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||| || |||| | ||||||||||||||||| |||| |||||||||||||  |||||||||| ||||||| ||||||| |||||||    
T  30969895 tttctcagtaaacctgaaaatacagttctcatccttatattcacaag-aaaattattcccatgattatattttgtaaacttgaaacaaagaccccct 30969990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 38536080 - 38536136
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||    
T  38536080 ttccaaaaatgcccttgcatttccggatttcataatccgaaatggtgttttcctttg 38536136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 6229066 - 6229012
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  6229066 caaaaatgtccttgaggtttcaggatttcataatccggaatggtgttttcctttg 6229012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12765177 - 12765105
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||| |||||||||||   | ||||||||||| ||| |||||||||| ||||||| |||||||||    
T  12765177 gaataaaattcttatccttatattttcaaaaaaattattctcaggattatattttgtaaacttgaaacaaaca 12765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 3703509 - 3703451
Alignment:
Q  184 cttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| |||||| |||| |||||||||||||||||| | |||||||||||||    
T  3703509 cttccaaaaatgcccttgaagtttccggatttcataatccgaactagtgttttcctttg 3703451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 34972786 - 34972840
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  34972786 caaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcctttg 34972840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39730564 - 39730642
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  39730564 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 39730642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 41413330 - 41413276
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||    
T  41413330 caaaaatgtccttgagattttcggatttcataatccggaatagtgtttttctttg 41413276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43723068 - 43722989
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  43723068 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 43722989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 6003928 - 6003874
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||| |||||||| |||| ||||||||||||||| ||||||| |||||||||    
T  6003928 caaaaatatccttgaggtttctggatttcataatccggaatggtggtttcctttg 6003874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 32441739 - 32441777
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  32441739 gtttccggatttcataatccggaatggtgttttcctttg 32441777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 41859318 - 41859396
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  41859318 aataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 41859396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 41744492 - 41744565
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  41744492 gaataaaattctcatctttatattccaatgaatgttattcctagaaataaatttggtaaacttgaaacaaacac 41744565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 38416479 - 38416531
Alignment:
Q  190 aaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||| ||||||| ||||||||||| |||  ||||||||||||||    
T  38416479 aaaatgtccttgaagttttcgaatttcataatctgaataggtgttttcctttg 38416531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41967449 - 41967537
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||| |||| ||| |||||||||||| ||||||||||||| || |||||||||||||  |||||||||| ||||||| ||||||||    
T  41967449 tttctcaataaatccgggaataaaattctgatccttatattcctaggaaaattattcccaatattatattttgtaaacttgaaacaaac 41967537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 17000281 - 17000337
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  17000281 ttccaaaaatgcccttgagttttcggatttcataatccagaatggtgttttcctttg 17000337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 34163030 - 34162923
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || ||||||          ||||||||||  |||||||||| |||||||||||||||| |||||    
T  34163030 ttagactattacttttcccacccagtgggtttcctcgcgcgcccttttttt----ttccaaaaatacccttgagtttccggatttcataatccggaatgg 34162935  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  34162934 tgttttcctttg 34162923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 24471562 - 24471505
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  24471562 ttccaaaaatgtccttgaggtttccggatttcataatccggaatggtgttttcctttg 24471505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 18583799 - 18583745
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  18583799 caaaaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttg 18583745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 19071677 - 19071590
Alignment:
Q  5 tcagtaaacccgagaataaaattctcatcc---ttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||||||||||||||||||||   ||||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  19071677 tcagtaaacccgagaataaaattctcatcctaattatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 19071590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 19119567 - 19119480
Alignment:
Q  5 tcagtaaacccgagaataaaattctcatcc---ttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||||||||||||||||||||   ||||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  19119567 tcagtaaacccgagaataaaattctcatcctaattatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 19119480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 25789564 - 25789491
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  25789564 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 25789491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25474056 - 25473976
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacacccccttt 98  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||||    
T  25474056 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccttt 25473976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 52630574 - 52630495
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  52630574 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 52630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 27794759 - 27794813
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  27794759 caaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttg 27794813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30829710 - 30829656
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||| |||||||||||||||| |||||||||||||||||    
T  30829710 caaaaatgcccttgaagtttccggatttcataatccggaatggtgttttcctttg 30829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 32202584 - 32202657
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| | || || |||| |||||||| ||||||||||    
T  32202584 gaataaaattctcatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacac 32202657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8331815 - 8331736
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  8331815 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 8331736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 46666510 - 46666431
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  46666510 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 46666431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 9446317 - 9446259
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| ||||||| ||||||||||| | |||||||| | |||||||||||||    
T  9446317 cttccaaaaatgcccttgagattttcggattttaaaatccgaacttgtgttttcctttg 9446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 32542326 - 32542364
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  32542326 gtttccggatttcataatccggaatggtgttttcctttg 32542364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 47031660 - 47031582
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  47031660 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 47031582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1228150 - 1228223
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||  |||| || ||||  ||||||| ||||||||||    
T  1228150 gaataaaattctcatctttatattccaaggaaggttattcatagaaataaatttggtaaacttaaaacaaacac 1228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9115638 - 9115565
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  9115638 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 9115565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 47677445 - 47677372
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||||||  ||||||| |  | || |||| |||||||| ||| ||||||    
T  47677445 gaataaaattctcatctttatattccaagaaattttattcctaagaataaatttcataaactttaaataaacac 47677372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 3470162 - 3470214
Alignment:
Q  123 ataaatattagactattacttttcccaccatgtgggtttccttgcacgcccta 175  Q
    ||||||| ||||||||||||||||||||| | ||  ||||||||||| |||||    
T  3470162 ataaatactagactattacttttcccaccctatgtctttccttgcacacccta 3470214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 49786951 - 49786911
Alignment:
Q  184 cttccaaaaatgtccttga-gttttcggatttcataatccg 223  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  49786951 cttccaaaaatgtccttgaggtttccggatttcataatccg 49786911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 48313923 - 48313843
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||||| |||||||||||||||  ||||||| |||| || |||| |||||||| |||||||||| |||||    
T  48313923 agaataaaattctcatctttatattccaagaaatgttattcctagaaataaatttgataaacttgaaacaaacacaccctt 48313843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19156354 - 19156312
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattcc 43  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  19156354 tttctcagtaaacccgtgaataaaattcacatccttatattcc 19156312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20755753 - 20755711
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattcc 43  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  20755753 tttctcagtaaacccgtgaataaaattcacatccttatattcc 20755711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 24042446 - 24042389
Alignment:
Q  184 cttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| ||||||||||  | |||||||||| || |||||||||||||||||    
T  24042446 cttccaaaaatgcccttgagtttctgaatttcataattcggaatggtgttttcctttg 24042389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 28904456 - 28904536
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  28904456 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 28904536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 30686263 - 30686335
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||| ||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  30686263 aataaaattttcatctttatattccaaggaatgttattcctagaaataaatttgataaacttaaaacaaacac 30686335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 37534374 - 37534446
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| |||||||||||| ||  ||||| | |||| || |||| |||||||| ||||||||||    
T  37534374 aataaaattctcatctttatattccaaggaatgttatttctagaaataaatttgataaacttgaaacaaacac 37534446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 11329793 - 11329714
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  11329793 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 11329714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 16278002 - 16278060
Alignment:
Q  185 ttccaaaaatgtccttgag--ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||  |||||| |||| | |||||||| |||||||||||||||    
T  16278002 ttccaaaaatgtccttgagatttttcgaattttaaaatccgaattggtgttttcctttg 16278060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 28230719 - 28230668
Alignment:
Q  190 aaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||| |||||||||||||||||| |||||||  |||||||||||| ||||    
T  28230719 aaaatgcccttgagttttcggattttataatccagaatggtgttttcttttg 28230668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 45265319 - 45265398
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  45265319 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 45265398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 47202398 - 47202452
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||||    
T  47202398 caaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttg 47202452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25097869 - 25097796
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaa-attattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||||||| ||||||||||| |||| |||||||| || | || ||||  ||||||| |||||||||    
T  25097869 gaataaaattctcatctttatattccaaaaaaatattattcctaggaataaatttggtaaacttaaaacaaaca 25097796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27419495 - 27419568
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||||||  ||||||| | || || ||||  ||||||| ||||||||||    
T  27419495 gaataaaattcccatctttatattccaagaaatgttattcctaaaaataaatttggtaaacttgaaacaaacac 27419568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 42925875 - 42925842
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  42925875 cggatttcataatccggaatggtgttttcctttg 42925842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 31598522 - 31598450
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||  ||| |||||||||||||||  ||||||||| || || ||||  ||||||| ||||||||||    
T  31598522 aataaaattcctatctttatattccaagaaatgttattcccaaaaataaatttggtaaacttaaaacaaacac 31598450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30062427 - 30062512
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattc-caagaaaaattattcccagaattatattttataaacttcaaacaa 87  Q
    |||||||||||| | | |||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||    
T  30062427 tttctcagtaaatctgggaataaaattttcatccttatattctcaag-aaaattattcccag-attatattttataaacttgaaacaa 30062512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2325114 - 2325192
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||  |||| ||||||||  ||||||||||| |||| ||||||||||| ||||||| |||||||||||||||    
T  2325114 gaataaaatttccatcgttatattctcagaaaaattatccccaaaattatattttgtaaacttgaaacaaacaccccct 2325192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21802710 - 21802801
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatcct---tatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    |||||||||||||||||||||||||||||||||||   |||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  21802710 tttctcagtaaacccgagaataaaattctcatcctaagtatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 21802801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 5699464 - 5699516
Alignment:
Q  189 aaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  5699464 aaaaatgtctttgagtttccggatttcataatccggaatggtgttttcctttg 5699516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 24604617 - 24604564
Alignment:
Q  189 aaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  24604617 aaaaatgtccttgaagttttcggatttcatattccgaactggtgttttcctttg 24604564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 4508600 - 4508503
Alignment:
Q  138 ttacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcc 237  Q
    |||||||||||||| |||||||||||| || |||||||         |||||||||||||||| ||||| ||||||| |||||||  ||||||||||||     
T  4508600 ttacttttcccaccctgtgggtttcctcgcgcgccctattt------ttccaaaaatgtccttaagtttccggattttataatccagaatggtgttttct 4508507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 5638780 - 5638834
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcct 238  Q
    ||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  5638780 ttccaaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcct 5638834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 16968725 - 16968652
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  16968725 gaataaaattctcatctttatattccaaagaatgttattcctagaaataaatttgataaacttgaaacaaacac 16968652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 33413604 - 33413547
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||    
T  33413604 ttccaaaaatgcctttgatgtttccggatttcataatccggaatggtgttttcctttg 33413547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1945780 - 1945732
Alignment:
Q  192 aatgtccttgagttttcggatttcataatccgaaatggtgttttccttt 240  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||||    
T  1945780 aatgtctttgagttttcggattttataatccggaatggtgtttttcttt 1945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 2813480 - 2813428
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttccttt 240  Q
    ||||||||| |||||| || ||||||||||||| || ||||||||||||||||    
T  2813480 caaaaatgttcttgagcttccggatttcataattcggaatggtgttttccttt 2813428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 21008250 - 21008322
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||||||| |||||||||||||||  ||||||  | || || |||| |||||||| |||||||||    
T  21008250 gaataaaattctcatctttatattccaagaaatgttattcataaaaataaatttaataaacttgaaacaaaca 21008322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 18897721 - 18897642
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  18897721 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 18897642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 23406648 - 23406754
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||         || |||||||| | |||| ||| |||||||| ||||||| |||||    
T  23406648 ttagactattacttttcccaccctgtggatttcctcgcgggccctatttt-----tttcaaaaatgccattgattttccggatttcgtaatccggaatgg 23406742  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  23406743 tgttttcctttg 23406754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 2657500 - 2657422
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  2657500 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 2657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 33791538 - 33791504
Alignment:
Q  3 tctcagtaaacccgagaataaaattctcatcctta 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  33791538 tctcagtaaacccgagaatataattctcatcctta 33791504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 3717592 - 3717484
Alignment:
Q  132 agactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtg 231  Q
    |||||||||||||||||||| | |||||||||| || ||| |||         ||||||||||| |||||||||| ||||||| ||||||   |||||||    
T  3717592 agactattacttttcccaccctttgggtttcctcgcgcgctctatttttttt-ttccaaaaatgcccttgagtttccggattttataatcttgaatggtg 3717494  T
Q  232 ttttcctttg 241  Q
    ||||| ||||    
T  3717493 ttttcttttg 3717484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 14170815 - 14170742
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  14170815 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 14170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 59229 - 59138
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatcct---tatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    |||||||||||||||||||||||||||||||||||   |||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  59229 tttctcagtaaacccgagaataaaattctcatcctaagtatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 59138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 33700657 - 33700715
Alignment:
Q  184 cttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  33700657 cttccaaaaatgtccttgaagtttctggatttcataatccggaatggtgttttcctttg 33700715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 47301924 - 47301977
Alignment:
Q  189 aaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  47301924 aaaaatgtccttgaagttttcggatttcataattcggaatggtgttttcctttg 47301977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 8735073 - 8735129
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||| | |||||||||||||||||||||| || |||||||||||||||||    
T  8735073 ttcccaaaatgcctttgagttttcggatttcataattcggaatggtgttttcctttg 8735129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 9087314 - 9087370
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||| | |||||||||||||||||||||| || |||||||||||||||||    
T  9087314 ttcccaaaatgcctttgagttttcggatttcataattcggaatggtgttttcctttg 9087370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 28872910 - 28872961
Alignment:
Q  190 aaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||||||||||||||| | |||| |||||| |||||    
T  28872910 aaaatgtccttgagttttcggatttcataatctggaatgatgtttttctttg 28872961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 6927892 - 6927818
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| ||||||||||    
T  6927892 agaataaaattctcatctttatattccaaggaatgttattcctagtaataaatttgataaacttaaaacaaacac 6927818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 43473204 - 43473150
Alignment:
Q  188 caaaaatgtccttgagttttcgga-tttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  43473204 caaaaatgtccttgaggtttccgaatttcataatccggaatggtgttttcctttg 43473150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 52777145 - 52777199
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||||||||||||||||| | |||||||||||||||||    
T  52777145 caaaaatgcccttgaggttttcggatttcataatctggaatggtgttttcctttg 52777199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 2358879 - 2358824
Alignment:
Q  188 caaaaatgtccttgagttttc--ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2358879 caaaaatgcccttgaggtttcccggatttcataatccggaatggtgttttcctttg 2358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 46359752 - 46359672
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacacccccttt 98  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||||    
T  46359752 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccttt 46359672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 11239391 - 11239470
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  11239391 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 11239470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 42936588 - 42936627
Alignment:
Q  202 agttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  42936588 agtttccggatttcataatccggaatggtgttttcctttg 42936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 26848822 - 26848744
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  26848822 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 26848744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 30722049 - 30722011
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  30722049 gttttcggatttcataatctgaactggtgttttcctttg 30722011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 33218184 - 33218262
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  33218184 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 33218262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 48303895 - 48303949
Alignment:
Q  188 caaaaatgtccttgagttttcg-gatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  |||||||||||||| |||||||||||||||||    
T  48303895 caaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttg 48303949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 51258307 - 51258361
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||  |||| ||||||||||||||| ||| |||||||||||||    
T  51258307 caaaaatgtccttgaagtttctggatttcataatccggaattgtgttttcctttg 51258361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 3903040 - 3903007
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  3903040 cggatttcataatccggaatggtgttttcctttg 3903007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 9320720 - 9320793
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |  | || |||| |||||||| ||||||||||    
T  9320720 gaataaaattctcatctttatattccaaggaatgttattcctatgaataaatttcataaacttgaaacaaacac 9320793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 42937203 - 42937146
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||| || |||| ||||||| |||||||||||||||||||| ||| ||||||    
T  42937203 ttccaaaaatatctttgaagttttcgaatttcataatccgaaatggtatttccctttg 42937146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 43719196 - 43719269
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||| | |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  43719196 gaataaaattctcaactttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 43719269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 50716157 - 50716210
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| ||| |||||||||| || ||||||||||||| |||||| ||||||||||    
T  50716157 caaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttg 50716210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 50796690 - 50796637
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| ||| |||||||||| || ||||||||||||| |||||| ||||||||||    
T  50796690 caaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttg 50796637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26849417 - 26849489
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||  |||| ||||||||||||||| |||||||| | || || ||||  ||||||| ||||||||||    
T  26849417 aataaaatttccatctttatattccaagaaatattattcctaaaaataaatttggtaaacttaaaacaaacac 26849489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16313778 - 16313857
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| | || || |||| |||||||| |||||||||| |||||    
T  16313778 gaataaaattctcatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccctt 16313857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 37248407 - 37248516
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||||| |  ||||||||| || |||||||        |||| ||||||| |||||||||| ||||||||| |||||  |||||    
T  37248407 ttagactattacttttcccaccctaggggtttcctcgcgcgccctattttttt-cttc-aaaaatgcccttgagtttccggatttcaaaatccagaatgg 37248504  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  37248505 tgttttcctttg 37248516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 18297912 - 18297839
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  18297912 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 18297839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 16310451 - 16310557
Alignment:
Q  133 gactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgt 232  Q
    ||||||||||||||||||| |||||||||||| || |||||||         || |||||||  ||||||||||   |||||||||||||  ||||||||    
T  16310451 gactattacttttcccaccctgtgggtttcctcgcgcgccctattttttt--tttcaaaaattcccttgagtttctcgatttcataatccagaatggtgt 16310548  T
Q  233 tttcctttg 241  Q
    |||||||||    
T  16310549 tttcctttg 16310557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 35818695 - 35818774
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  35818695 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 35818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7931039 - 7930961
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || ||||  ||||||| |||||||||| ||||    
T  7931039 gaataaaattctcatctttatattccaaagaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 7930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 21004294 - 21004348
Alignment:
Q  188 caaaaatgtccttgagttttcg-gatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  |||||||||||||| |||||||||||||||||    
T  21004294 caaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttg 21004348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 10896487 - 10896560
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  10896487 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 10896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 38363881 - 38363808
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| ||||||||||    
T  38363881 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacac 38363808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 15995365 - 15995310
Alignment:
Q  186 tccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||| |||| ||||||||||||| |||||||| |||||||||||| ||||    
T  15995365 tccaaaaatgccctttagttttcggattttataatccggaatggtgttttcttttg 15995310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 37192322 - 37192243
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  37192322 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 37192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 34517002 - 34517059
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||| |||||||||||||||| |||||| |||||||||||||||    
T  34517002 ttccaaaaatgcctttgaagttttcggatttcatattccgaactggtgttttcctttg 34517059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2050666 - 2050587
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| | || || |||| |||||||| |||||||||| |||||    
T  2050666 gaataaaattcccatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccctt 2050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 5507320 - 5507374
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||||||| |||||||||||||| | |||||||||||||    
T  5507320 caaaaatgcccttgaagttttcgggtttcataatccgaactagtgttttcctttg 5507374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 14777769 - 14777847
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  14777769 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 14777847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 25715267 - 25715321
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||| ||||||| |||||||| |||||||||||||||||    
T  25715267 caaaaatgcccttgaagtttccggattttataatccggaatggtgttttcctttg 25715321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 5770381 - 5770454
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||  ||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  5770381 gaataaaattcctatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 5770454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 9734117 - 9734190
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  9734117 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttaaaacaaacac 9734190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 17965783 - 17965710
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  17965783 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 17965710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 3654 - 3598
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| |||||||||| || || | |||||||| |||||||||||| ||||    
T  3654 ttccaaaaatgcccttgagtttccgaatcttataatccggaatggtgttttcttttg 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 201727 - 201647
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||| |||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  201727 agaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 201647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University