View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14895_low_1 (Length: 695)
Name: NF14895_low_1
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_low_1 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 229 - 695
Target Start/End: Original strand, 38982812 - 38983278
Alignment:
| Q |
229 |
tctttcccattgcaacaatcataagaagaagatcaattaataggtgaaaaagttgag-ttttaagggagagataagagtgaatctttgtcaagttcatta |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38982812 |
tctttcccattgcaacaatcataagaagaagatcaattaagaggtgaaaaagttgagattttaagagagagataagagtgaatctttgtcaagttcatta |
38982911 |
T |
|
| Q |
328 |
ctagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagttgttggagtaagggt |
427 |
Q |
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| T |
38982912 |
ctagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagctgttggaggaagggt |
38983011 |
T |
|
| Q |
428 |
aagggggttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgttttagactgaacattaatttggag |
527 |
Q |
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| T |
38983012 |
aagaggattgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcatcattgttttagactgaacattaatttggaa |
38983111 |
T |
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| Q |
528 |
aaactcattggcatcacactcttagttagaatgtaaactcacgattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtg |
627 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38983112 |
aaactcattggcatcacactcttagttatattgtaaactcacgattgttagttacacaaacaagaaaagatgagattttaacaatggcttgatgtttgtg |
38983211 |
T |
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| Q |
628 |
gtgggttagtgaaagaaatggatgagagacaacggtgcagaagagaatgataaatagatctagtgttg |
695 |
Q |
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| T |
38983212 |
gtgggttagtg-aaggaatggatgagagacaacggtaaggaagataatgataaatagatctagtgttg |
38983278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 38979367 - 38979581
Alignment:
| Q |
19 |
ctcctaccatctaagccaccattctctgttatcttgttatttatttatcaataattattaattgtataaagcatgaacatcgtgagattatcatggatga |
118 |
Q |
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| T |
38979367 |
ctcctaccatctaagctaccattctctgttatcttgttatttatttatcaataattattaattgtataaagcatgaacatcgtgagattatcatggatga |
38979466 |
T |
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| Q |
119 |
gagtttgagcaccaaaagtgaaatcagccataaaataaactaaagatgcacaaccttttatcaatctgattgaattgaaaaaacaatgattattttgatc |
218 |
Q |
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| T |
38979467 |
gagtttgagcaccaaaagtgaaatcagccataaaatagactaaagctgcacaaccctttatcaatctgattgaattgaaaaaaccatgattattttgatc |
38979566 |
T |
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| Q |
219 |
ataagttgtgtcttt |
233 |
Q |
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| T |
38979567 |
ataagttgtgtcttt |
38979581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 417
Target Start/End: Original strand, 41261577 - 41261667
Alignment:
| Q |
330 |
agaagaagaga--tggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
417 |
Q |
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| T |
41261577 |
agaagaagagacatgggcaattaataaggttagaagtaagggttatgatttaaaagagaacattaatctggagaaaatcatgtggttgttg |
41261667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 335 - 694
Target Start/End: Complemental strand, 12139821 - 12139463
Alignment:
| Q |
335 |
aagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagttgttggagtaagggtaaggggg |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | | |
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| T |
12139821 |
aagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaatcatgtagctgttggaggaagggtaagagag |
12139722 |
T |
|
| Q |
435 |
ttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgttttagactgaacattaatttggagaaactca |
534 |
Q |
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| T |
12139721 |
ttgtcgtaatgttggtagagacaaagggataatatggtggtgttagactaaattctttggcatcattgttttagactgaacattaatttggagaaactca |
12139622 |
T |
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| Q |
535 |
ttggcatcacactcttagttagaatgtaaactcacgattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtggtgggtt |
634 |
Q |
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| T |
12139621 |
ttggcatcacactcttagttagattgtaaactcaccattgttagttacacaaacaagaaaatatgagattttaacaatggcttgatgtttgtggtgggtt |
12139522 |
T |
|
| Q |
635 |
agtgaaagaaatggatgagagacaacggtgcagaagagaatgataaatagatctagtgtt |
694 |
Q |
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|||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12139521 |
agtg-aaggaatggatgagagacaacggtgaggaagagaatgataaatagatctagtgtt |
12139463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 305 - 640
Target Start/End: Original strand, 46097582 - 46097918
Alignment:
| Q |
305 |
gtgaatctttgtcaagttcattactagaagaagagatggacaatgaataaggtgagaagtaggggtaatgttttaaattgaacattaatttggagaaaat |
404 |
Q |
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| T |
46097582 |
gtgaatctttgtcaagttcattacaagaagaagagatggacaatgaatacggtgagaagtaggagtaatgttttaaactgaacattaatttggagaaaat |
46097681 |
T |
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| Q |
405 |
catgtagttgttggagtaagggtaagggggttgtcgtgatgttggtagagacaaagggataatatggtggtgttagactaaattctttggtatcattgtt |
504 |
Q |
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||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
46097682 |
catgtagctgttggaggaagggtaagagggttgtcgtgatgttggtggagacaaagggatagtatggtggtgttagactaaatttattgacatcattgtt |
46097781 |
T |
|
| Q |
505 |
ttagactgaacattaatttggagaaactcattggcatcacactcttagttagaatgtaaact--cacgattgttagttacacaaacaagaaaatatgaga |
602 |
Q |
| |
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||| ||||||||||||||||||| || |||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
46097782 |
ttaaactgaacattaatttggag-aattcattggcgccacactgttagttagattgtaaactcacacgattgttagttacacaaacaaggaaagatgaga |
46097880 |
T |
|
| Q |
603 |
ttttaacaatggcttgatgtttgtggtgggttagtgaa |
640 |
Q |
| |
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| T |
46097881 |
ttttaacaatggcttgatgttggtggtgggttagtgaa |
46097918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 12201739 - 12201649
Alignment:
| Q |
330 |
agaagaagaga--tggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
417 |
Q |
| |
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||||||||||| ||| |||| |||||||| ||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
12201739 |
agaagaagagacatgggcaattaataaggttagaagtaagggttatgatttaaaagagaacattaatttggagaaaatcatgtagttgttg |
12201649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 8615503 - 8615570
Alignment:
| Q |
297 |
agataagagtgaatctttgtcaagttcattactagaagaagag--atggacaatgaataaggtgagaa |
362 |
Q |
| |
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||||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||| |||| |
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| T |
8615503 |
agataagagagaatctttgtcaagttggttacaagaagaagagacatggacaatgaataaggttagaa |
8615570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 10670526 - 10670448
Alignment:
| Q |
340 |
atggacaatgaataaggtgagaagtaggggtaatgttttaaatt-gaacattaatttggagaaaatcatgtagttgttg |
417 |
Q |
| |
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|||| |||| |||||| | ||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
10670526 |
atgggcaattaataagattagaagtaagggttatgatttaaaagagaacattaatttggagaaaatcatgtagttgttg |
10670448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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