View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14895_low_11 (Length: 255)

Name: NF14895_low_11
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14895_low_11
NF14895_low_11
[»] chr5 (24 HSPs)
chr5 (1-241)||(33487288-33487530)
chr5 (130-241)||(4064921-4065032)
chr5 (1-89)||(5978362-5978450)
chr5 (185-241)||(15957614-15957670)
chr5 (18-96)||(12970801-12970879)
chr5 (185-241)||(1350465-1350522)
chr5 (188-241)||(38871538-38871591)
chr5 (4-59)||(1360436-1360491)
chr5 (185-236)||(20891476-20891527)
chr5 (18-96)||(8406616-8406694)
chr5 (19-91)||(1664458-1664530)
chr5 (185-241)||(24203881-24203937)
chr5 (17-96)||(4765830-4765909)
chr5 (18-97)||(6091436-6091515)
chr5 (18-96)||(18411931-18412009)
chr5 (184-241)||(28445614-28445672)
chr5 (208-241)||(6156618-6156651)
chr5 (18-91)||(11855926-11855999)
chr5 (19-96)||(14207093-14207170)
chr5 (184-240)||(16428921-16428978)
chr5 (185-241)||(26318981-26319038)
chr5 (204-241)||(27212591-27212628)
chr5 (18-91)||(27481084-27481157)
chr5 (19-91)||(27480738-27480810)
[»] chr4 (16 HSPs)
chr4 (130-241)||(55052820-55052931)
chr4 (130-241)||(25539149-25539259)
chr4 (1-96)||(30969895-30969990)
chr4 (185-241)||(38536080-38536136)
chr4 (188-241)||(6229012-6229066)
chr4 (18-90)||(12765105-12765177)
chr4 (184-241)||(3703451-3703509)
chr4 (188-241)||(34972786-34972840)
chr4 (18-96)||(39730564-39730642)
chr4 (188-241)||(41413276-41413330)
chr4 (18-97)||(43722989-43723068)
chr4 (188-241)||(6003874-6003928)
chr4 (203-241)||(32441739-32441777)
chr4 (19-97)||(41859318-41859396)
chr4 (18-91)||(41744492-41744565)
chr4 (190-241)||(38416479-38416531)
[»] chr1 (23 HSPs)
chr1 (1-89)||(41967449-41967537)
chr1 (185-241)||(17000281-17000337)
chr1 (130-241)||(34162923-34163030)
chr1 (185-241)||(24471505-24471562)
chr1 (188-241)||(18583745-18583799)
chr1 (5-89)||(19071590-19071677)
chr1 (5-89)||(19119480-19119567)
chr1 (18-91)||(25789491-25789564)
chr1 (18-98)||(25473976-25474056)
chr1 (18-97)||(52630495-52630574)
chr1 (188-241)||(27794759-27794813)
chr1 (188-241)||(30829656-30829710)
chr1 (18-91)||(32202584-32202657)
chr1 (18-97)||(8331736-8331815)
chr1 (17-96)||(46666431-46666510)
chr1 (184-241)||(9446259-9446317)
chr1 (203-241)||(32542326-32542364)
chr1 (18-96)||(47031582-47031660)
chr1 (18-91)||(1228150-1228223)
chr1 (18-91)||(9115565-9115638)
chr1 (18-91)||(47677372-47677445)
chr1 (123-175)||(3470162-3470214)
chr1 (184-223)||(49786911-49786951)
[»] chr7 (16 HSPs)
chr7 (17-97)||(48313843-48313923)
chr7 (1-43)||(19156312-19156354)
chr7 (1-43)||(20755711-20755753)
chr7 (184-241)||(24042389-24042446)
chr7 (17-97)||(28904456-28904536)
chr7 (19-91)||(30686263-30686335)
chr7 (19-91)||(37534374-37534446)
chr7 (18-97)||(11329714-11329793)
chr7 (185-241)||(16278002-16278060)
chr7 (190-241)||(28230668-28230719)
chr7 (18-97)||(45265319-45265398)
chr7 (188-241)||(47202398-47202452)
chr7 (18-90)||(25097796-25097869)
chr7 (18-91)||(27419495-27419568)
chr7 (208-241)||(42925842-42925875)
chr7 (19-91)||(31598450-31598522)
[»] chr6 (18 HSPs)
chr6 (1-87)||(30062427-30062512)
chr6 (18-96)||(2325114-2325192)
chr6 (1-89)||(21802710-21802801)
chr6 (189-241)||(5699464-5699516)
chr6 (189-241)||(24604564-24604617)
chr6 (138-241)||(4508503-4508600)
chr6 (185-238)||(5638780-5638834)
chr6 (18-91)||(16968652-16968725)
chr6 (185-241)||(33413547-33413604)
chr6 (192-240)||(1945732-1945780)
chr6 (188-240)||(2813428-2813480)
chr6 (18-90)||(21008250-21008322)
chr6 (18-97)||(18897642-18897721)
chr6 (130-241)||(23406648-23406754)
chr6 (18-96)||(2657422-2657500)
chr6 (3-37)||(33791504-33791538)
chr6 (132-241)||(3717484-3717592)
chr6 (18-91)||(14170742-14170815)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-89)||(59138-59229)
[»] chr3 (24 HSPs)
chr3 (184-241)||(33700657-33700715)
chr3 (189-241)||(47301924-47301977)
chr3 (185-241)||(8735073-8735129)
chr3 (185-241)||(9087314-9087370)
chr3 (190-241)||(28872910-28872961)
chr3 (17-91)||(6927818-6927892)
chr3 (188-241)||(43473150-43473204)
chr3 (188-241)||(52777145-52777199)
chr3 (188-241)||(2358824-2358879)
chr3 (18-98)||(46359672-46359752)
chr3 (18-97)||(11239391-11239470)
chr3 (202-241)||(42936588-42936627)
chr3 (18-96)||(26848744-26848822)
chr3 (203-241)||(30722011-30722049)
chr3 (18-96)||(33218184-33218262)
chr3 (188-241)||(48303895-48303949)
chr3 (188-241)||(51258307-51258361)
chr3 (208-241)||(3903007-3903040)
chr3 (18-91)||(9320720-9320793)
chr3 (185-241)||(42937146-42937203)
chr3 (18-91)||(43719196-43719269)
chr3 (188-241)||(50716157-50716210)
chr3 (188-241)||(50796637-50796690)
chr3 (19-91)||(26849417-26849489)
[»] chr8 (9 HSPs)
chr8 (18-97)||(16313778-16313857)
chr8 (130-241)||(37248407-37248516)
chr8 (18-91)||(18297839-18297912)
chr8 (133-241)||(16310451-16310557)
chr8 (18-97)||(35818695-35818774)
chr8 (18-96)||(7930961-7931039)
chr8 (188-241)||(21004294-21004348)
chr8 (18-91)||(10896487-10896560)
chr8 (18-91)||(38363808-38363881)
[»] chr2 (10 HSPs)
chr2 (186-241)||(15995310-15995365)
chr2 (18-97)||(37192243-37192322)
chr2 (185-241)||(34517002-34517059)
chr2 (18-97)||(2050587-2050666)
chr2 (188-241)||(5507320-5507374)
chr2 (18-96)||(14777769-14777847)
chr2 (188-241)||(25715267-25715321)
chr2 (18-91)||(5770381-5770454)
chr2 (18-91)||(9734117-9734190)
chr2 (18-91)||(17965710-17965783)
[»] scaffold0508 (1 HSPs)
scaffold0508 (185-241)||(3598-3654)
[»] scaffold0006 (1 HSPs)
scaffold0006 (17-97)||(201647-201727)


Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33487288 - 33487530
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctttnn 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||      
T  33487288 tttctcagtaaacccgagaataaaattctaatccttatattccaagaaaaattattgccagaattacattttataaacttcaaacaaacaccccttttaa 33487387  T
Q  101 nnnnntgaaccaaccttccttgataaatattagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttc--caaaaatgtcc 198  Q
         |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||         |||  |||||||||||    
T  33487388 aaaaatgaaccaaccttccttgataaatattagactattacttttcccaccctgtgggtttcctcgcgcgccctatttttttttttcttcaaaaatgtcc 33487487  T
Q  199 ttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  33487488 ttgagtttccggatttcataatccggaatggtgttttcctttg 33487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 4065032 - 4064921
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || |||||||        |||||||||||| |||||||||| |||||||||||||||| |||||    
T  4065032 ttagactattacttttcccacccagtgggtttcctcgcgcgccctattttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatgg 4064933  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  4064932 tgttttcctttg 4064921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5978450 - 5978362
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||   |||||| |||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||    
T  5978450 tttctcagtaaatttgagaatcaaattcccatccttatattcctaaaaaaattatttccagaattatattttataaacttgaaacaaac 5978362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 15957614 - 15957670
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||    
T  15957614 ttccaaaaatgcctttgagttttcggattttataatccgaaatggtgttttcttttg 15957670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 12970801 - 12970879
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| |||||||||| ||||    
T  12970801 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 12970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 1350522 - 1350465
Alignment:
Q  185 ttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  1350522 ttccaaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttg 1350465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 38871538 - 38871591
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||    
T  38871538 caaaaatatccttgagttttcggattttataatccggaatggtgttttcttttg 38871591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 1360491 - 1360436
Alignment:
Q  4 ctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattccc 59  Q
    ||||||||| | | |||||||||||||||||||||||||  |||||||||||||||    
T  1360491 ctcagtaaatctgggaataaaattctcatccttatattcttagaaaaattattccc 1360436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 20891476 - 20891527
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttc 236  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||||||||||    
T  20891476 ttccaaaaatgcccttgagtatccggattttataatccgaaatggtgttttc 20891527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 8406694 - 8406616
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || |||| |||||||| |||||||||| ||||    
T  8406694 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacacaccct 8406616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 1664530 - 1664458
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||| | || ||||  ||||||| ||||||||||    
T  1664530 aataaaattctcatctttatatttcaagaaatattattctcaggaataaatttggtaaacttgaaacaaacac 1664458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 24203937 - 24203881
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||||||| ||||||| |||||||| |||||||||||| ||||    
T  24203937 ttccaaaaatgccattgagtttccggattttataatccggaatggtgttttcttttg 24203881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 4765830 - 4765909
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  4765830 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 4765909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 6091515 - 6091436
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  6091515 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 6091436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18412009 - 18411931
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  18412009 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 18411931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 28445672 - 28445614
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||| ||||||||||| | |||||||| |  ||||||||||||    
T  28445672 cttccaaaaatgtccttgagattttcggattttaaaatccgaactaatgttttcctttg 28445614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 6156618 - 6156651
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  6156618 cggatttcataatccggaatggtgttttcctttg 6156651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11855926 - 11855999
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  11855926 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 11855999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 14207093 - 14207170
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||| |||||||||||  ||  ||||||| || | || ||||| ||||||| |||||||||| ||||    
T  14207093 aataaaattctcatctttatattccaatgaatgttattcctaggaataaattttgtaaacttgaaacaaacacaccct 14207170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 16428921 - 16428978
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttccttt 240  Q
    |||||||||||||||||||| |||||  | || | |||||||||||||||||||||||    
T  16428921 cttccaaaaatgtccttgagattttcaaagtttaaaatccgaaatggtgttttccttt 16428978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 26318981 - 26319038
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||| | |||| |||||||||||| || |||||||||||||||||    
T  26318981 ttccaaaaatgcccttgcggtttccggatttcataattcggaatggtgttttcctttg 26319038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 27212591 - 27212628
Alignment:
Q  204 ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||||| || ||||||||||||    
T  27212591 ttttcggatttcataatccgaactgatgttttcctttg 27212628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 27481157 - 27481084
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  27481157 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 27481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27480810 - 27480738
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| ||||||| ||||||| |||||||| | || || ||||  ||||||| ||| ||||||    
T  27480810 aataaaattctcatctttatatttcaagaaatattattcctaaaaataaatttggtaaacttaaaataaacac 27480738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 55052931 - 55052820
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || ||||||         |||||||||||| |||||||||| |||||||||||||||| |||||    
T  55052931 ttagactattacttttcccacccagtgggtttcctcgcgcgcccttttttttttcttccaaaaatgcccttgagtttccggatttcataatccggaatgg 55052832  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  55052831 tgttttcctttg 55052820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 25539259 - 25539149
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||| |||||||||||||| |  |||||||         |||||||||||||| ||||||| |||||||||||||||| |||||    
T  25539259 ttagactattacttttcccagcatgtgggtttcctcgtgcgccctatttttttt-ttccaaaaatgtccctgagtttccggatttcataatccggaatgg 25539161  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  25539160 tgttttcctttg 25539149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30969895 - 30969990
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattc-caagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||| || |||| | ||||||||||||||||| |||| |||||||||||||  |||||||||| ||||||| ||||||| |||||||    
T  30969895 tttctcagtaaacctgaaaatacagttctcatccttatattcacaag-aaaattattcccatgattatattttgtaaacttgaaacaaagaccccct 30969990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 38536080 - 38536136
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||    
T  38536080 ttccaaaaatgcccttgcatttccggatttcataatccgaaatggtgttttcctttg 38536136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 6229066 - 6229012
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  6229066 caaaaatgtccttgaggtttcaggatttcataatccggaatggtgttttcctttg 6229012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12765177 - 12765105
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||| |||||||||||   | ||||||||||| ||| |||||||||| ||||||| |||||||||    
T  12765177 gaataaaattcttatccttatattttcaaaaaaattattctcaggattatattttgtaaacttgaaacaaaca 12765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 3703509 - 3703451
Alignment:
Q  184 cttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| |||||| |||| |||||||||||||||||| | |||||||||||||    
T  3703509 cttccaaaaatgcccttgaagtttccggatttcataatccgaactagtgttttcctttg 3703451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 34972786 - 34972840
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  34972786 caaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcctttg 34972840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 39730564 - 39730642
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  39730564 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 39730642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 41413330 - 41413276
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||    
T  41413330 caaaaatgtccttgagattttcggatttcataatccggaatagtgtttttctttg 41413276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 43723068 - 43722989
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  43723068 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 43722989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 6003928 - 6003874
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||| |||||||| |||| ||||||||||||||| ||||||| |||||||||    
T  6003928 caaaaatatccttgaggtttctggatttcataatccggaatggtggtttcctttg 6003874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 32441739 - 32441777
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  32441739 gtttccggatttcataatccggaatggtgttttcctttg 32441777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 41859318 - 41859396
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  41859318 aataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 41859396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 41744492 - 41744565
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  41744492 gaataaaattctcatctttatattccaatgaatgttattcctagaaataaatttggtaaacttgaaacaaacac 41744565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 38416479 - 38416531
Alignment:
Q  190 aaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||| ||||||| ||||||||||| |||  ||||||||||||||    
T  38416479 aaaatgtccttgaagttttcgaatttcataatctgaataggtgttttcctttg 38416531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41967449 - 41967537
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||| |||| ||| |||||||||||| ||||||||||||| || |||||||||||||  |||||||||| ||||||| ||||||||    
T  41967449 tttctcaataaatccgggaataaaattctgatccttatattcctaggaaaattattcccaatattatattttgtaaacttgaaacaaac 41967537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 17000281 - 17000337
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  17000281 ttccaaaaatgcccttgagttttcggatttcataatccagaatggtgttttcctttg 17000337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 34163030 - 34162923
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    ||||||||||||||||||||||  ||||||||||| || ||||||          ||||||||||  |||||||||| |||||||||||||||| |||||    
T  34163030 ttagactattacttttcccacccagtgggtttcctcgcgcgcccttttttt----ttccaaaaatacccttgagtttccggatttcataatccggaatgg 34162935  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  34162934 tgttttcctttg 34162923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 24471562 - 24471505
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||    
T  24471562 ttccaaaaatgtccttgaggtttccggatttcataatccggaatggtgttttcctttg 24471505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 18583799 - 18583745
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  18583799 caaaaatgcccttgaggttttcggatttcataatccggaatggtgttttcctttg 18583745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 19071677 - 19071590
Alignment:
Q  5 tcagtaaacccgagaataaaattctcatcc---ttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||||||||||||||||||||   ||||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  19071677 tcagtaaacccgagaataaaattctcatcctaattatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 19071590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 19119567 - 19119480
Alignment:
Q  5 tcagtaaacccgagaataaaattctcatcc---ttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    ||||||||||||||||||||||||||||||   ||||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  19119567 tcagtaaacccgagaataaaattctcatcctaattatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 19119480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 25789564 - 25789491
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  25789564 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 25789491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 25474056 - 25473976
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacacccccttt 98  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||||    
T  25474056 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccttt 25473976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 52630574 - 52630495
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  52630574 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 52630495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 27794759 - 27794813
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||  |||||||||||||||||||||| |||||||||||||||    
T  27794759 caaaaatgcccttgaaattttcggatttcataatccgaactggtgttttcctttg 27794813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 30829710 - 30829656
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||| |||||||||||||||| |||||||||||||||||    
T  30829710 caaaaatgcccttgaagtttccggatttcataatccggaatggtgttttcctttg 30829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 32202584 - 32202657
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| | || || |||| |||||||| ||||||||||    
T  32202584 gaataaaattctcatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacac 32202657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8331815 - 8331736
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  8331815 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 8331736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 46666510 - 46666431
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  46666510 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 46666431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 9446317 - 9446259
Alignment:
Q  184 cttccaaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| ||||||| ||||||||||| | |||||||| | |||||||||||||    
T  9446317 cttccaaaaatgcccttgagattttcggattttaaaatccgaacttgtgttttcctttg 9446259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 32542326 - 32542364
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  32542326 gtttccggatttcataatccggaatggtgttttcctttg 32542364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 47031660 - 47031582
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  47031660 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 47031582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1228150 - 1228223
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||  |||| || ||||  ||||||| ||||||||||    
T  1228150 gaataaaattctcatctttatattccaaggaaggttattcatagaaataaatttggtaaacttaaaacaaacac 1228223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9115638 - 9115565
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  9115638 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 9115565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 47677445 - 47677372
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||||||  ||||||| |  | || |||| |||||||| ||| ||||||    
T  47677445 gaataaaattctcatctttatattccaagaaattttattcctaagaataaatttcataaactttaaataaacac 47677372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 3470162 - 3470214
Alignment:
Q  123 ataaatattagactattacttttcccaccatgtgggtttccttgcacgcccta 175  Q
    ||||||| ||||||||||||||||||||| | ||  ||||||||||| |||||    
T  3470162 ataaatactagactattacttttcccaccctatgtctttccttgcacacccta 3470214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 49786951 - 49786911
Alignment:
Q  184 cttccaaaaatgtccttga-gttttcggatttcataatccg 223  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  49786951 cttccaaaaatgtccttgaggtttccggatttcataatccg 49786911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 48313923 - 48313843
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||||| |||||||||||||||  ||||||| |||| || |||| |||||||| |||||||||| |||||    
T  48313923 agaataaaattctcatctttatattccaagaaatgttattcctagaaataaatttgataaacttgaaacaaacacaccctt 48313843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19156354 - 19156312
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattcc 43  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  19156354 tttctcagtaaacccgtgaataaaattcacatccttatattcc 19156312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20755753 - 20755711
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattcc 43  Q
    |||||||||||||||| ||||||||||| ||||||||||||||    
T  20755753 tttctcagtaaacccgtgaataaaattcacatccttatattcc 20755711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 24042446 - 24042389
Alignment:
Q  184 cttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||| ||||||||||  | |||||||||| || |||||||||||||||||    
T  24042446 cttccaaaaatgcccttgagtttctgaatttcataattcggaatggtgttttcctttg 24042389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 28904456 - 28904536
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  28904456 agaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 28904536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 30686263 - 30686335
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||| ||||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  30686263 aataaaattttcatctttatattccaaggaatgttattcctagaaataaatttgataaacttaaaacaaacac 30686335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 37534374 - 37534446
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||| |||||||||||| ||  ||||| | |||| || |||| |||||||| ||||||||||    
T  37534374 aataaaattctcatctttatattccaaggaatgttatttctagaaataaatttgataaacttgaaacaaacac 37534446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 11329793 - 11329714
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  11329793 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 11329714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 16278002 - 16278060
Alignment:
Q  185 ttccaaaaatgtccttgag--ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||  |||||| |||| | |||||||| |||||||||||||||    
T  16278002 ttccaaaaatgtccttgagatttttcgaattttaaaatccgaattggtgttttcctttg 16278060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 28230719 - 28230668
Alignment:
Q  190 aaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||| |||||||||||||||||| |||||||  |||||||||||| ||||    
T  28230719 aaaatgcccttgagttttcggattttataatccagaatggtgttttcttttg 28230668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 45265319 - 45265398
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  45265319 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 45265398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 47202398 - 47202452
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||| ||||||||||||||| |||||||||||| ||||    
T  47202398 caaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcttttg 47202452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 25097869 - 25097796
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaa-attattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||||||| ||||||||||| |||| |||||||| || | || ||||  ||||||| |||||||||    
T  25097869 gaataaaattctcatctttatattccaaaaaaatattattcctaggaataaatttggtaaacttaaaacaaaca 25097796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 27419495 - 27419568
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||||||  ||||||| | || || ||||  ||||||| ||||||||||    
T  27419495 gaataaaattcccatctttatattccaagaaatgttattcctaaaaataaatttggtaaacttgaaacaaacac 27419568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 42925875 - 42925842
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  42925875 cggatttcataatccggaatggtgttttcctttg 42925842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 31598522 - 31598450
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||  ||| |||||||||||||||  ||||||||| || || ||||  ||||||| ||||||||||    
T  31598522 aataaaattcctatctttatattccaagaaatgttattcccaaaaataaatttggtaaacttaaaacaaacac 31598450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30062427 - 30062512
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatccttatattc-caagaaaaattattcccagaattatattttataaacttcaaacaa 87  Q
    |||||||||||| | | |||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||    
T  30062427 tttctcagtaaatctgggaataaaattttcatccttatattctcaag-aaaattattcccag-attatattttataaacttgaaacaa 30062512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2325114 - 2325192
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||  |||| ||||||||  ||||||||||| |||| ||||||||||| ||||||| |||||||||||||||    
T  2325114 gaataaaatttccatcgttatattctcagaaaaattatccccaaaattatattttgtaaacttgaaacaaacaccccct 2325192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 21802710 - 21802801
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatcct---tatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    |||||||||||||||||||||||||||||||||||   |||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  21802710 tttctcagtaaacccgagaataaaattctcatcctaagtatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 21802801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 5699464 - 5699516
Alignment:
Q  189 aaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  5699464 aaaaatgtctttgagtttccggatttcataatccggaatggtgttttcctttg 5699516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 24604617 - 24604564
Alignment:
Q  189 aaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  24604617 aaaaatgtccttgaagttttcggatttcatattccgaactggtgttttcctttg 24604564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 4508600 - 4508503
Alignment:
Q  138 ttacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcc 237  Q
    |||||||||||||| |||||||||||| || |||||||         |||||||||||||||| ||||| ||||||| |||||||  ||||||||||||     
T  4508600 ttacttttcccaccctgtgggtttcctcgcgcgccctattt------ttccaaaaatgtccttaagtttccggattttataatccagaatggtgttttct 4508507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 5638780 - 5638834
Alignment:
Q  185 ttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcct 238  Q
    ||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  5638780 ttccaaaaatgcccttgaggtttccggatttcataatccggaatggtgttttcct 5638834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 16968725 - 16968652
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  16968725 gaataaaattctcatctttatattccaaagaatgttattcctagaaataaatttgataaacttgaaacaaacac 16968652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 33413604 - 33413547
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||    
T  33413604 ttccaaaaatgcctttgatgtttccggatttcataatccggaatggtgttttcctttg 33413547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 1945780 - 1945732
Alignment:
Q  192 aatgtccttgagttttcggatttcataatccgaaatggtgttttccttt 240  Q
    |||||| |||||||||||||||| |||||||| ||||||||||| ||||    
T  1945780 aatgtctttgagttttcggattttataatccggaatggtgtttttcttt 1945732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 2813480 - 2813428
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttccttt 240  Q
    ||||||||| |||||| || ||||||||||||| || ||||||||||||||||    
T  2813480 caaaaatgttcttgagcttccggatttcataattcggaatggtgttttccttt 2813428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 21008250 - 21008322
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaaca 90  Q
    |||||||||||||||| |||||||||||||||  ||||||  | || || |||| |||||||| |||||||||    
T  21008250 gaataaaattctcatctttatattccaagaaatgttattcataaaaataaatttaataaacttgaaacaaaca 21008322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 18897721 - 18897642
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| |||||    
T  18897721 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccctt 18897642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 23406648 - 23406754
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||||| ||||| |||||| ||  ||||||         || |||||||| | |||| ||| |||||||| ||||||| |||||    
T  23406648 ttagactattacttttcccaccctgtggatttcctcgcgggccctatttt-----tttcaaaaatgccattgattttccggatttcgtaatccggaatgg 23406742  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  23406743 tgttttcctttg 23406754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 2657500 - 2657422
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  2657500 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 2657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 33791538 - 33791504
Alignment:
Q  3 tctcagtaaacccgagaataaaattctcatcctta 37  Q
    |||||||||||||||||||| ||||||||||||||    
T  33791538 tctcagtaaacccgagaatataattctcatcctta 33791504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 3717592 - 3717484
Alignment:
Q  132 agactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtg 231  Q
    |||||||||||||||||||| | |||||||||| || ||| |||         ||||||||||| |||||||||| ||||||| ||||||   |||||||    
T  3717592 agactattacttttcccaccctttgggtttcctcgcgcgctctatttttttt-ttccaaaaatgcccttgagtttccggattttataatcttgaatggtg 3717494  T
Q  232 ttttcctttg 241  Q
    ||||| ||||    
T  3717493 ttttcttttg 3717484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 14170815 - 14170742
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  14170815 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 14170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 59229 - 59138
Alignment:
Q  1 tttctcagtaaacccgagaataaaattctcatcct---tatattccaagaaaaattattcccagaattatattttataaacttcaaacaaac 89  Q
    |||||||||||||||||||||||||||||||||||   |||||||  || ||||||||| | || || ||||||| ||||||| ||||||||    
T  59229 tttctcagtaaacccgagaataaaattctcatcctaagtatattcacaggaaaattatttcaaggatcatattttgtaaacttgaaacaaac 59138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 33700657 - 33700715
Alignment:
Q  184 cttccaaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||  |||| ||||||||||||||| |||||||||||||||||    
T  33700657 cttccaaaaatgtccttgaagtttctggatttcataatccggaatggtgttttcctttg 33700715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 47301924 - 47301977
Alignment:
Q  189 aaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||||||    
T  47301924 aaaaatgtccttgaagttttcggatttcataattcggaatggtgttttcctttg 47301977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 8735073 - 8735129
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||| | |||||||||||||||||||||| || |||||||||||||||||    
T  8735073 ttcccaaaatgcctttgagttttcggatttcataattcggaatggtgttttcctttg 8735129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 9087314 - 9087370
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| |||||| | |||||||||||||||||||||| || |||||||||||||||||    
T  9087314 ttcccaaaatgcctttgagttttcggatttcataattcggaatggtgttttcctttg 9087370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 28872910 - 28872961
Alignment:
Q  190 aaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||||||||||||||||||| | |||| |||||| |||||    
T  28872910 aaaatgtccttgagttttcggatttcataatctggaatgatgtttttctttg 28872961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 6927892 - 6927818
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||||||||| |||||||||||| ||  ||||||| || | || |||| |||||||| ||||||||||    
T  6927892 agaataaaattctcatctttatattccaaggaatgttattcctagtaataaatttgataaacttaaaacaaacac 6927818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 43473204 - 43473150
Alignment:
Q  188 caaaaatgtccttgagttttcgga-tttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||| || |||||||||||| |||||||||||||||||    
T  43473204 caaaaatgtccttgaggtttccgaatttcataatccggaatggtgttttcctttg 43473150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 52777145 - 52777199
Alignment:
Q  188 caaaaatgtccttgag-ttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| |||||||||||||||||| | |||||||||||||||||    
T  52777145 caaaaatgcccttgaggttttcggatttcataatctggaatggtgttttcctttg 52777199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 2358879 - 2358824
Alignment:
Q  188 caaaaatgtccttgagttttc--ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2358879 caaaaatgcccttgaggtttcccggatttcataatccggaatggtgttttcctttg 2358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 46359752 - 46359672
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacacccccttt 98  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||||    
T  46359752 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacacccttt 46359672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 11239391 - 11239470
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  11239391 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 11239470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 42936588 - 42936627
Alignment:
Q  202 agttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  42936588 agtttccggatttcataatccggaatggtgttttcctttg 42936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 26848822 - 26848744
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  26848822 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 26848744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 30722049 - 30722011
Alignment:
Q  203 gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  30722049 gttttcggatttcataatctgaactggtgttttcctttg 30722011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 33218184 - 33218262
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| ||||    
T  33218184 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccct 33218262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 48303895 - 48303949
Alignment:
Q  188 caaaaatgtccttgagttttcg-gatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  |||||||||||||| |||||||||||||||||    
T  48303895 caaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttg 48303949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 51258307 - 51258361
Alignment:
Q  188 caaaaatgtccttgagttttc-ggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||  |||| ||||||||||||||| ||| |||||||||||||    
T  51258307 caaaaatgtccttgaagtttctggatttcataatccggaattgtgttttcctttg 51258361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 3903040 - 3903007
Alignment:
Q  208 cggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||||||||| |||||||||||||||||    
T  3903040 cggatttcataatccggaatggtgttttcctttg 3903007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 9320720 - 9320793
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |  | || |||| |||||||| ||||||||||    
T  9320720 gaataaaattctcatctttatattccaaggaatgttattcctatgaataaatttcataaacttgaaacaaacac 9320793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 42937203 - 42937146
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||| || |||| ||||||| |||||||||||||||||||| ||| ||||||    
T  42937203 ttccaaaaatatctttgaagttttcgaatttcataatccgaaatggtatttccctttg 42937146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 43719196 - 43719269
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||| | |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  43719196 gaataaaattctcaactttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 43719269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 50716157 - 50716210
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| ||| |||||||||| || ||||||||||||| |||||| ||||||||||    
T  50716157 caaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttg 50716210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 50796690 - 50796637
Alignment:
Q  188 caaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||| ||| |||||||||| || ||||||||||||| |||||| ||||||||||    
T  50796690 caaagatgcccttgagtttccgaatttcataatccggaatggtattttcctttg 50796637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26849417 - 26849489
Alignment:
Q  19 aataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||  |||| ||||||||||||||| |||||||| | || || ||||  ||||||| ||||||||||    
T  26849417 aataaaatttccatctttatattccaagaaatattattcctaaaaataaatttggtaaacttaaaacaaacac 26849489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 16313778 - 16313857
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| | || || |||| |||||||| |||||||||| |||||    
T  16313778 gaataaaattctcatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccctt 16313857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 37248407 - 37248516
Alignment:
Q  130 ttagactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatgg 229  Q
    |||||||||||||||||||||| |  ||||||||| || |||||||        |||| ||||||| |||||||||| ||||||||| |||||  |||||    
T  37248407 ttagactattacttttcccaccctaggggtttcctcgcgcgccctattttttt-cttc-aaaaatgcccttgagtttccggatttcaaaatccagaatgg 37248504  T
Q  230 tgttttcctttg 241  Q
    ||||||||||||    
T  37248505 tgttttcctttg 37248516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 18297912 - 18297839
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  18297912 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 18297839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 16310451 - 16310557
Alignment:
Q  133 gactattacttttcccaccatgtgggtttccttgcacgccctannnnnnnncttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgt 232  Q
    ||||||||||||||||||| |||||||||||| || |||||||         || |||||||  ||||||||||   |||||||||||||  ||||||||    
T  16310451 gactattacttttcccaccctgtgggtttcctcgcgcgccctattttttt--tttcaaaaattcccttgagtttctcgatttcataatccagaatggtgt 16310548  T
Q  233 tttcctttg 241  Q
    |||||||||    
T  16310549 tttcctttg 16310557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 35818695 - 35818774
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  35818695 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 35818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 7931039 - 7930961
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    |||||||||||||||| |||||||||||  ||  ||||||| |||| || ||||  ||||||| |||||||||| ||||    
T  7931039 gaataaaattctcatctttatattccaaagaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccct 7930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 21004294 - 21004348
Alignment:
Q  188 caaaaatgtccttgagttttcg-gatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| ||||||| ||||  |||||||||||||| |||||||||||||||||    
T  21004294 caaaaatgcccttgaggtttccagatttcataatccggaatggtgttttcctttg 21004348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 10896487 - 10896560
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||||||| |||||||||||| ||  ||||||| || | || ||||  ||||||| ||||||||||    
T  10896487 gaataaaattctcatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacac 10896560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 38363881 - 38363808
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| ||||||||||    
T  38363881 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacac 38363808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 15995365 - 15995310
Alignment:
Q  186 tccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||||| |||| ||||||||||||| |||||||| |||||||||||| ||||    
T  15995365 tccaaaaatgccctttagttttcggattttataatccggaatggtgttttcttttg 15995310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 37192322 - 37192243
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||||||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| |||||||||| |||||    
T  37192322 gaataaaattctcatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacacaccctt 37192243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 34517002 - 34517059
Alignment:
Q  185 ttccaaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| | |||| |||||||||||||||| |||||| |||||||||||||||    
T  34517002 ttccaaaaatgcctttgaagttttcggatttcatattccgaactggtgttttcctttg 34517059  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2050666 - 2050587
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| | || || |||| |||||||| |||||||||| |||||    
T  2050666 gaataaaattcccatctttatattccaaggaatgttattcctaaaaataaatttgataaacttgaaacaaacacaccctt 2050587  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 5507320 - 5507374
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||||||| |||||||||||||| | |||||||||||||    
T  5507320 caaaaatgcccttgaagttttcgggtttcataatccgaactagtgttttcctttg 5507374  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 14777769 - 14777847
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccct 96  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| || | || |||| |||||||| |||||||||| ||||    
T  14777769 gaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttgataaacttgaaacaaacacaccct 14777847  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 25715267 - 25715321
Alignment:
Q  188 caaaaatgtccttga-gttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    |||||||| |||||| |||| ||||||| |||||||| |||||||||||||||||    
T  25715267 caaaaatgcccttgaagtttccggattttataatccggaatggtgttttcctttg 25715321  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 5770381 - 5770454
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    |||||||||||  ||| |||||||||||| ||  ||||||| |||| || |||| |||||||| ||||||||||    
T  5770381 gaataaaattcctatctttatattccaaggaatgttattcctagaaataaatttgataaacttgaaacaaacac 5770454  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 9734117 - 9734190
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  9734117 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttaaaacaaacac 9734190  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 17965783 - 17965710
Alignment:
Q  18 gaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacac 91  Q
    ||||||||||| |||| |||||||||||| ||  ||||||| |||| || ||||  ||||||| ||||||||||    
T  17965783 gaataaaattcccatctttatattccaaggaatgttattcctagaaataaatttggtaaacttgaaacaaacac 17965710  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 3654 - 3598
Alignment:
Q  185 ttccaaaaatgtccttgagttttcggatttcataatccgaaatggtgttttcctttg 241  Q
    ||||||||||| |||||||||| || || | |||||||| |||||||||||| ||||    
T  3654 ttccaaaaatgcccttgagtttccgaatcttataatccggaatggtgttttcttttg 3598  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 201727 - 201647
Alignment:
Q  17 agaataaaattctcatccttatattccaagaaaaattattcccagaattatattttataaacttcaaacaaacaccccctt 97  Q
    |||||||||||| |||| |||||||||||| ||  ||||||| || | || ||||  ||||||| |||||||||| |||||    
T  201727 agaataaaattcccatctttatattccaaggaatgttattcctaggaataaatttggtaaacttgaaacaaacacaccctt 201647  T

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