View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14895_low_3 (Length: 418)
Name: NF14895_low_3
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14895_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 63 - 357
Target Start/End: Complemental strand, 31795528 - 31795229
Alignment:
| Q |
63 |
cttggtgtatatgtttacctcaatcattctttcatgcacttcccaggagaaatataaattagcacacgaaaaccttcaatgcctaacnnnnnnnnnnnnn |
162 |
Q |
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| T |
31795528 |
cttggtgtatatatttacctcaatcgttctttcatgcactttccatgagaaatataaattagcacacgaaaaccttcaatgcctaac-ttttttttcatt |
31795430 |
T |
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| Q |
163 |
nnnnnnnnggtttcaaagagcc------tagttgcgaaactcacatatactaaatgagaagaaaatgagtattgtgggtttgaacatacaccccgacatt |
256 |
Q |
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|||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31795429 |
ctttttttggtttcaaagagcctagtgctagtggcgaaactcacatatattaaatgagaagaaaatgagtattgtgggtttgaacatacaccccggcatt |
31795330 |
T |
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| Q |
257 |
catatttctccccaaccttttataatttgaggtgcacttacgttaaaacatccaacnnnnnnnatattgttctaccttttcaactttattagcatttggt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
31795329 |
catatttctccccaaccttttataatttgaggtgcacttacgttaaaacatccaactttttttatattcttctaccttttcaactttattagcatttggt |
31795230 |
T |
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