View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14895_low_5 (Length: 378)

Name: NF14895_low_5
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14895_low_5
NF14895_low_5
[»] chr4 (31 HSPs)
chr4 (159-358)||(48734899-48735098)
chr4 (198-370)||(49038411-49038577)
chr4 (60-148)||(48734767-48734855)
chr4 (187-376)||(48147235-48147418)
chr4 (235-370)||(45365784-45365919)
chr4 (235-370)||(45371638-45371773)
chr4 (304-370)||(7790442-7790508)
chr4 (196-370)||(48870922-48871096)
chr4 (196-370)||(48876226-48876400)
chr4 (318-375)||(48156076-48156133)
chr4 (318-370)||(7878745-7878797)
chr4 (318-370)||(7908664-7908716)
chr4 (187-370)||(48853043-48853226)
chr4 (196-370)||(48886608-48886782)
chr4 (184-370)||(49043681-49043867)
chr4 (184-370)||(49048068-49048254)
chr4 (16-130)||(48864686-48864796)
chr4 (318-370)||(50666677-50666729)
chr4 (323-370)||(48864397-48864444)
chr4 (304-370)||(48903317-48903383)
chr4 (318-367)||(7771760-7771809)
chr4 (322-370)||(7773476-7773524)
chr4 (318-370)||(7800999-7801051)
chr4 (318-370)||(7813839-7813891)
chr4 (235-265)||(45384454-45384484)
chr4 (318-367)||(7237390-7237439)
chr4 (16-81)||(49106108-49106173)
chr4 (318-370)||(7786826-7786878)
chr4 (326-370)||(45384547-45384591)
chr4 (322-370)||(47208239-47208287)
chr4 (203-283)||(48899189-48899269)
[»] chr8 (2 HSPs)
chr8 (174-283)||(4030291-4030400)
chr8 (27-94)||(4030093-4030160)
[»] chr3 (4 HSPs)
chr3 (182-265)||(47451411-47451494)
chr3 (318-370)||(11024150-11024202)
chr3 (323-370)||(11005580-11005627)
chr3 (318-370)||(11015138-11015190)
[»] chr5 (4 HSPs)
chr5 (323-366)||(42561985-42562028)
chr5 (328-370)||(179420-179462)
chr5 (304-370)||(9120125-9120191)
chr5 (27-130)||(29696896-29697001)
[»] chr2 (2 HSPs)
chr2 (27-94)||(29351111-29351178)
chr2 (174-255)||(29350899-29350980)
[»] chr1 (4 HSPs)
chr1 (318-375)||(24416135-24416192)
chr1 (318-363)||(24323139-24323184)
chr1 (318-366)||(24310582-24310630)
chr1 (318-366)||(24367531-24367579)
[»] chr7 (1 HSPs)
chr7 (18-70)||(48884563-48884615)
[»] chr6 (2 HSPs)
chr6 (325-365)||(14197337-14197377)
chr6 (318-370)||(21016183-21016235)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 358
Target Start/End: Original strand, 48734899 - 48735098
Alignment:
Q  159 cttcaaattcgcatgaatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgct 258  Q
    ||||||||||  | ||||||  ||||| ||||||||||||||||||||||| |||| ||| ||||||||| || |||||||||||||||||||||||  |    
T  48734899 cttcaaattcagaagaataggggcgatgctctagcagctgtcctttgtcattgtacctcaccaatccagtctcctgatctgttccaataatatcaccatt 48734998  T
Q  259 ttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatc 358  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||| |||| ||||||||| || ||||||    
T  48734999 ttttgtacaacaaaatggggaaaagctctcgttgggagtgccatcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 370
Target Start/End: Original strand, 49038411 - 49038577
Alignment:
Q  198 gtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagt 297  Q
    ||||||||||||| ||||||||||||| | | | |  ||||||||||||||||| ||| ||||||||| |||| |  |||||||||      | |||| |    
T  49038411 gtcctttgtcatcatacttcatcaatcgattataaccatctgttccaataatatgaccactttttgtacaacatataggggaaaag------tagggaat 49038504  T
Q  298 gccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||| ||||||||||| || |||| ||||||||||| ||||| |||||||| || ||||||||||||||||||    
T  49038505 gccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttca 49038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 48734767 - 48734855
Alignment:
Q  60 aagagttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattccacaacctcattctttcttcttaggcttgttca 148  Q
    ||||||||||| | || ||||||||||||||||||| |||||||| ||||| ||| |||||||||||   |||||||||||||||||||    
T  48734767 aagagttcataatgcaatataaatatcaagaaaatggatggtgaaaaagaacatttcacaacctcatatcttcttcttaggcttgttca 48734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 187 - 376
Target Start/End: Original strand, 48147235 - 48147418
Alignment:
Q  187 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 286  Q
    |||||| |||||||||||||| |  ||||||| |||| |||| |||  || |||||||||||| ||||| ||||||||  | || |  |||||||||       
T  48147235 ctctagaagctgtcctttgtcgttatacttcaacaattcagtttcaccatttgttccaataatgtcaccactttttgtggagcatataggggaaaag--- 48147331  T
Q  287 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctctg 376  Q
       | |||| |||||| |||||||| |  | |||| ||||||||||| |||||||||||||| || |||||||||||||||||| |||||    
T  48147332 ---tagggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctg 48147418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 45365784 - 45365919
Alignment:
Q  235 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 334  Q
    ||||||||||||||||||||||||||||||| | || || |||||||||   |   ||||| |||||| |||||  ||| | ||||| || ||||||||     
T  45365784 atctgttccaataatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagac 45365883  T
Q  335 gaatgcactttgtactccttcatcacccatatttca 370  Q
    ||| ||||||| || || ||||||||||||||||||    
T  45365884 gaacgcactttatattctttcatcacccatatttca 45365919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 370
Target Start/End: Original strand, 45371638 - 45371773
Alignment:
Q  235 atctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttgggagtgccattaatagacagaccatgagttttagtccaagat 334  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||  |    | |||  |||||  ||||  ||| ||  ||| |||||||||||     
T  45371638 atctgttccaattatatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagac 45371737  T
Q  335 gaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||||||||| || ||||| ||||||||||||    
T  45371738 gaatgcactttgtattctttcataacccatatttca 45371773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 7790508 - 7790442
Alignment:
Q  304 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||| ||| || |||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  7790508 aatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttca 7790442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 370
Target Start/End: Complemental strand, 48871096 - 48870922
Alignment:
Q  196 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 295  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48871096 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48870997  T
Q  296 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48870996 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48870922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 370
Target Start/End: Complemental strand, 48876400 - 48876226
Alignment:
Q  196 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 295  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| | || |    
T  48876400 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcggaa 48876301  T
Q  296 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48876300 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48876226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 375
Target Start/End: Original strand, 48156076 - 48156133
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctct 375  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||    
T  48156076 gagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactct 48156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7878797 - 7878745
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  7878797 gagttttaatccaagatgaatgcactttgtattctttcatcacccatatttca 7878745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7908716 - 7908664
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  7908716 gagttttattccaagatgaatgcactttgtattctttcatcacccatatttca 7908664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 370
Target Start/End: Complemental strand, 48853226 - 48853043
Alignment:
Q  187 ctctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctc 286  Q
    ||||||||  ||||||| | |||| ||||||| ||||||| | |||  ||| ||||||||||||||||| || |||||| |||| | ||||||||||       
T  48853226 ctctagcaaatgtccttcgccatcatacttcaccaatccactatcaccatccgttccaataatatcaccactctttgtacaacatattggggaaaagtag 48853127  T
Q  287 tcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |   ||||| ||  | ||| ||| ||| || |||| ||||||||||| ||| |||||||||| || ||||| ||||||||||||    
T  48853126 tgagtgggaatggaactaaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttca 48853043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 370
Target Start/End: Complemental strand, 48886782 - 48886608
Alignment:
Q  196 ctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaagctctcgttggga 295  Q
    |||||| |||||||| ||||||| ||||||| |  ||  || || ||||||||||||||| ||||||||| | |||||||||||||||  ||| |  | |    
T  48886782 ctgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaaggactcatcagaa 48886683  T
Q  296 gtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
     || ||| || ||| ||| || |||| || |||||||| || | ||||||||| || ||||||||||| ||||||    
T  48886682 atgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttca 48886608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 370
Target Start/End: Original strand, 49043681 - 49043867
Alignment:
Q  184 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 283  Q
    ||||||||| | ||||||||| ||||| ||||||| |||||||   |||  ||| |||||||||||||||||  |||||||| |||| | ||| |  |||    
T  49043681 atactctagaaactgtcctttttcatcatacttcaccaatccaacttcaccatcagttccaataatatcaccaatttttgtacaacatattggagcgaag 49043780  T
Q  284 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
       |   ||||| || ||| |||||| | | || |||| |||||||| || |||||||||||||| || ||||||||||||||||||    
T  49043781 taatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttca 49043867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 370
Target Start/End: Original strand, 49048068 - 49048254
Alignment:
Q  184 atactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 283  Q
    ||||||||| | ||||||||| ||||||||||||| |||||||   |||  ||| ||| ||||||||||||| |||||||||   || | ||| || |||    
T  49048068 atactctagaaactgtcctttttcatcgtacttcaccaatccaacttcaccatcagttgcaataatatcaccactttttgtacggcatattggagagaag 49048167  T
Q  284 ctctcgttgggagtgccattaatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |  | | ||||| || ||| | |||| | | ||  ||| |||||||| || ||||||||||| ||||| ||||||||||||||||||    
T  49048168 caatgggtgggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttca 49048254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 48864796 - 48864686
Alignment:
Q  16 acaaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaatgaatggtgaagaagaatattc 115  Q
    ||||||||||  |||||||| |||| ||||| |||||| ||   |||||||||||  ||| ||||||||||||||||||     |||||| ||||||||     
T  48864796 acaaatgcatttaaacacatggtaccctacaaatgcagtcatccaagagttcataacacaatataaatatcaagaaaata----gtgaaggagaatattt 48864701  T
Q  116 cacaacctcattctt 130  Q
    |||||||||||||||    
T  48864700 cacaacctcattctt 48864686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 50666729 - 50666677
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  50666729 gagttttagtccaagatgaatgcactttgtattcttacatcacccataattca 50666677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 48864444 - 48864397
Alignment:
Q  323 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||    
T  48864444 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 48864397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 48903383 - 48903317
Alignment:
Q  304 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||||| ||  | |||||||||||||  ||||||||||||| || ||||||||||||||||||    
T  48903383 aatagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttca 48903317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 7771809 - 7771760
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 367  Q
    ||||||||||||| || |||||||||||||| || |||||||||||||||    
T  7771809 gagttttagtccatgacgaatgcactttgtattctttcatcacccatatt 7771760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 370
Target Start/End: Original strand, 7773476 - 7773524
Alignment:
Q  322 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||| ||||||| |||||||||||||| || ||||||||||||||||||    
T  7773476 tttaatccaagacgaatgcactttgtattctttcatcacccatatttca 7773524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7801051 - 7800999
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7801051 gagttttattccaagacgaatgcactttgtaatctttcaacacccatatttca 7800999  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7813891 - 7813839
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| ||||||| |||||||||||||| || |||| |||||||||||||    
T  7813891 gagttttattccaagacgaatgcactttgtattctttcaacacccatatttca 7813839  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 45384454 - 45384484
Alignment:
Q  235 atctgttccaataatatcaccgctttttgta 265  Q
    |||||||||||||||||||||||||||||||    
T  45384454 atctgttccaataatatcaccgctttttgta 45384484  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 7237390 - 7237439
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatt 367  Q
    |||||||||||||| | ||||||| |||||| || |||||||||||||||    
T  7237390 gagttttagtccaaaacgaatgcattttgtattctttcatcacccatatt 7237439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 49106108 - 49106173
Alignment:
Q  16 acaaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcatagtacagtataa 81  Q
    |||||| ||| |||||||||| || |||||| ||||| ||||| ||||||||||| |||| |||||    
T  49106108 acaaatccattcaaacacatactaatctacaaatgcaaccactcaagagttcataatacaatataa 49106173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 7786878 - 7786826
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||| ||| |||||||| ||||||| ||||| || ||||||||||||||||||    
T  7786878 gagtcttattccaagataaatgcacgttgtattctttcatcacccatatttca 7786826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 45384547 - 45384591
Alignment:
Q  326 gtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| ||||||||||| || || ||||||||||||||||||    
T  45384547 gtccaagacgaatgcactttatattctttcatcacccatatttca 45384591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 47208287 - 47208239
Alignment:
Q  322 tttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||||||||| || |||||||| || |||||||||| |||||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttca 47208239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 48899269 - 48899189
Alignment:
Q  203 ttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaatggggaaaag 283  Q
    |||||||| ||||||| |||||||   |||  |||||||||||||||||  || ||||||||| | ||||||||| |||||    
T  48899269 ttgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaag 48899189  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 4030291 - 4030400
Alignment:
Q  174 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgtataacacaa 273  Q
    ||||| |||||| |||||||| ||||||||||||||| ||||||| |||| ||||  ||  || |||||||||||||||||| ||| ||||| | ||||     
T  4030291 aatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgtagagcacat 4030390  T
Q  274 tggggaaaag 283  Q
    ||||||||||    
T  4030391 tggggaaaag 4030400  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 4030093 - 4030160
Alignment:
Q  27 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 94  Q
    |||||||||||||| ||||| ||||| || |  ||||||||||| |||| ||||| ||||||||||||    
T  4030093 caaacacatagtaccctacaaatgcaaccgcccaagagttcataatacaatataattatcaagaaaat 4030160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 47451411 - 47451494
Alignment:
Q  182 cgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcaccgctttttgta 265  Q
    |||| ||||| || ||||||||||||||  ||||| | |||||| || |||| ||||||||||||||||||||| |||||||||    
T  47451411 cgatgctctaacaactgtcctttgtcattatacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 11024150 - 11024202
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||| ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11024150 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttca 11024202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 11005580 - 11005627
Alignment:
Q  323 ttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  11005580 ttagtccaagacgaatgcactttgtattctttcataacccatatttca 11005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 11015138 - 11015190
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||  |||||| |||||||||||||| || ||||| ||||||||||||    
T  11015138 gagttttaacccaagacgaatgcactttgtattctttcataacccatatttca 11015190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 42561985 - 42562028
Alignment:
Q  323 ttagtccaagatgaatgcactttgtactccttcatcacccatat 366  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  42561985 ttagtccaagatgaatgcactttgtattctttcatcacccatat 42562028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 370
Target Start/End: Complemental strand, 179462 - 179420
Alignment:
Q  328 ccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttca 179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 9120191 - 9120125
Alignment:
Q  304 aatagacagaccatgagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||||||| | || |||||||  ||||||| |||||||||||||| || ||||||||||||||||||    
T  9120191 aatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttca 9120125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 29697001 - 29696896
Alignment:
Q  27 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaatgaa--tggtgaagaagaatattccacaacctc 124  Q
    |||||| ||| ||| ||||| ||||||| ||| |||||| |||| |||| ||||| ||| ||||  |||||  ||||||||||||||| | || ||||||    
T  29697001 caaacatatattaccctacaaatgcagctactcaagagtccataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctc 29696902  T
Q  125 attctt 130  Q
    ||||||    
T  29696901 attctt 29696896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 29351178 - 29351111
Alignment:
Q  27 caaacacatagtactctacagatgcagccactgaagagttcatagtacagtataaatatcaagaaaat 94  Q
    |||||||||||||| ||||| ||||| ||||  ||||||||||| |||| ||||| ||||||||||||    
T  29351178 caaacacatagtaccctacaaatgcaaccacccaagagttcataatacaatataattatcaagaaaat 29351111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 29350980 - 29350899
Alignment:
Q  174 aatagaagcgatactctagcagctgtcctttgtcatcgtacttcatcaatccagtgtcatgatctgttccaataatatcacc 255  Q
    ||||| |||||| |||||||| ||||||||||||||  ||||||| |||| ||||  ||  ||| |||||||||||||||||    
T  29350980 aatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcacc 29350899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 24416192 - 24416135
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttcatctct 375  Q
    ||||||||||||||||||| ||| ||||||| || |||||||||||||| ||| ||||    
T  24416192 gagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactct 24416135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 24323184 - 24323139
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcaccca 363  Q
    ||||||||||| ||||||| ||||||||||| || |||||||||||    
T  24323184 gagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 24310630 - 24310582
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 366  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  24310630 gagttttactccaagaagactgcactttgtattctttcatcacccatat 24310582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 24367579 - 24367531
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatat 366  Q
    |||||||||||||||| |||||||||||||| || | ||| ||||||||    
T  24367579 gagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 48884615 - 48884563
Alignment:
Q  18 aaatgcatgcaaacacatagtactctacagatgcagccactgaagagttcata 70  Q
    |||||||  |||||||||| ||||||||| ||||||||||  |||||||||||    
T  48884615 aaatgcagtcaaacacatattactctacaaatgcagccaccaaagagttcata 48884563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  325 agtccaagatgaatgcactttgtactccttcatcacccata 365  Q
    ||||||||||||||||| |||||| || |||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 21016235 - 21016183
Alignment:
Q  318 gagttttagtccaagatgaatgcactttgtactccttcatcacccatatttca 370  Q
    |||| ||||||||||| ||||| |||||||| || ||||| ||||||||||||    
T  21016235 gagtcttagtccaagacgaatgtactttgtattctttcataacccatatttca 21016183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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