View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14895_low_7 (Length: 312)

Name: NF14895_low_7
Description: NF14895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14895_low_7
NF14895_low_7
[»] chr5 (3 HSPs)
chr5 (17-301)||(33487017-33487300)
chr5 (46-266)||(1360510-1360741)
chr5 (46-98)||(28319729-28319781)
[»] chr7 (3 HSPs)
chr7 (46-223)||(19156414-19156598)
chr7 (46-223)||(20755813-20755997)
chr7 (144-271)||(45857152-45857280)
[»] chr1 (4 HSPs)
chr1 (50-212)||(41967209-41967370)
chr1 (169-238)||(19072467-19072536)
chr1 (169-238)||(19120357-19120426)
chr1 (178-263)||(27457140-27457226)
[»] chr3 (2 HSPs)
chr3 (46-235)||(26655156-26655349)
chr3 (46-118)||(17384107-17384178)
[»] chr4 (2 HSPs)
chr4 (148-266)||(30969760-30969879)
chr4 (46-118)||(12765275-12765347)
[»] chr6 (1 HSPs)
chr6 (46-195)||(15914236-15914391)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 301
Target Start/End: Original strand, 33487017 - 33487300
Alignment:
Q  17 atcaactctttgggggcgtttgtttcgactttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaat 116  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||   |||||||||||||||    
T  33487017 atcaactctttggaggcgtttgtttcaactttcaagtcatatttgaaaattcctgggaatatgatgg-aggaaagatatatttttatgtttatttcaaat 33487115  T
Q  117 ttaaaattttatttctgtgaataaaagttggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33487116 ttaaaattttatttctgtgaataaaagttggaatgttgttttgttcctaagaaaattggatggaataaagttcccatgaatgtggaaataaaatcaataa 33487215  T
Q  217 ttactatctataaatatcgcttaatagttattttcaggaatactttaaattttaaatgataaccaaacacattttccctgtaaac 301  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||    
T  33487216 ttactatccataaatatcgcttaataattattttcaggaatactttaaagtttaaatgataaccaaacacattttctcagtaaac 33487300  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 46 - 266
Target Start/End: Complemental strand, 1360741 - 1360510
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcag---gaaagatatattcccatgtttatttcaaattt--aaaattttatttctgtgaataa 140  Q
    |||||| ||||||||||| ||||   |||||||||||||||   ||||||||||||   |||||| ||||||||||  |||||||||||| || ||||||    
T  1360741 tttcaattcatatttgaagattcactggaatatgatagcagcacgaaagatatatttttatgtttgtttcaaatttttaaaattttatttttgggaataa 1360642  T
Q  141 aagtt-----ggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcg 235  Q
    |  ||     | ||||||||||||||||||||||||||||   |||||||||||| | ||| |||  |||||||||| ||||||| ||||||||||||||    
T  1360641 attttttatggaaatgttgttttgttcctaagaaaattgggaagaataaagttcttaggaaggtgagaataaaatcattaattacaatctataaatatcg 1360542  T
Q  236 cttaat-agttattttcaggaatactttaaat 266  Q
     || || ||||||| ||||||||| |||||||    
T  1360541 ttttatcagttattctcaggaatattttaaat 1360510  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 28319729 - 28319781
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatatt 98  Q
    ||||||| |||||||||| ||||  | |||||||||||| |||||||||||||    
T  28319729 tttcaagccatatttgaagattcaggagaatatgatagctggaaagatatatt 28319781  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 19156598 - 19156414
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaattt--aaaattttatttctgtgaataaaag 143  Q
    |||||||||||||||| | |||||| | |||| |||| ||||||||||||||| | ||||||  |||||||||  ||||||||||| ||| ||||| |||    
T  19156598 tttcaagtcatatttggagattcctagaaataggatatcaggaaagatatatttctatgtttgattcaaatttttaaaattttattcctgggaatagaag 19156499  T
Q  144 tt-----ggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactat 223  Q
    ||     |||||||||||| ||||||||| |||||||  |||||||||||||||||||  ||| |||||||||| ||||||||||    
T  19156498 tttcttaggaatgttgtttcgttcctaaggaaattgggaggaataaagttctcatgaagctgggaataaaatcattaattactat 19156414  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 20755997 - 20755813
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaattt--aaaattttatttctgtgaataaaag 143  Q
    |||||||||||||||| | |||||| | |||| |||| ||||||||||||||| | ||||||  |||||||||  ||||||||||| ||| ||||| |||    
T  20755997 tttcaagtcatatttggagattcctagaaataggatatcaggaaagatatatttctatgtttgattcaaatttttaaaattttattcctgggaatagaag 20755898  T
Q  144 tt-----ggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactat 223  Q
    ||     |||||||||||| ||||||||| |||||||  |||||||||||||||||||  ||| |||||||||| ||||||||||    
T  20755897 tttcttaggaatgttgtttcgttcctaaggaaattgggaggaataaagttctcatgaagctgggaataaaatcattaattactat 20755813  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 45857280 - 45857152
Alignment:
Q  144 ttggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcgcttaatag 243  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||| || || |    
T  45857280 ttggaatgttgttttattcctaagaaaattagaaggaataaagttctcataaatgtggaaataaaatcattaattattatccataaatatcgttttatcg 45857181  T
Q  244 -ttattttcaggaatactttaaattttaa 271  Q
     | ||||||| ||||||||||||| ||||    
T  45857180 atcattttcatgaatactttaaatattaa 45857152  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 212
Target Start/End: Original strand, 41967209 - 41967370
Alignment:
Q  50 aagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaatttaaaattttatttctgtgaataaaagtt---- 145  Q
    |||| |||||| || |||||||| ||||||||||||| ||||||||||| | |||||| |||      |||||||||||||||| ||||| |||||        
T  41967209 aagttatatttaaagattcctggaaatatgatagcagaaaagatatatttctatgtttgttt------taaaattttatttctgggaatagaagtttcct 41967302  T
Q  146 -ggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatca 212  Q
     | ||||||||||||||||||||||||||||   ||| |||||| ||||||| |||| ||||||||||    
T  41967303 agaaatgttgttttgttcctaagaaaattgggatgaagaaagttttcatgaaggtgggaataaaatca 41967370  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 19072536 - 19072467
Alignment:
Q  169 aaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcgctt 238  Q
    |||||||  ||||||||||||   ||||||||| |||||||||| |||||| |||| |||||||||||||    
T  19072536 aaattgggaggaataaagttccattgaatgtggtaataaaatcattaattagtatccataaatatcgctt 19072467  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 19120426 - 19120357
Alignment:
Q  169 aaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcgctt 238  Q
    |||||||  ||||||||||||   ||||||||| |||||||||| |||||| |||| |||||||||||||    
T  19120426 aaattgggaggaataaagttccattgaatgtggtaataaaatcattaattagtatccataaatatcgctt 19120357  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 27457226 - 27457140
Alignment:
Q  178 ggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcgcttaat-agttattttcaggaatacttta 263  Q
    |||||||||||| ||| || |||  |||||||||| ||||||||||| |||||||||| || || ||| ||||| ||||||| ||||    
T  27457226 ggaataaagttcccataaaagtgagaataaaatcattaattactatccataaatatcgttttatcagtcattttaaggaataattta 27457140  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 46 - 235
Target Start/End: Original strand, 26655156 - 26655349
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaat--ttaaaattttatt-tctgtgaataaaa 142  Q
    |||||||||||||||| |||||| || ||||  |||||||||||||||||||||  |||||| ||||||||  ||||||||||||| || | | ||| ||    
T  26655156 tttcaagtcatatttggaaattcttgagaat--gatagcaggaaagatatattcttatgtttgtttcaaattcttaaaattttattctcggag-atataa 26655252  T
Q  143 gtt-----ggaatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcg 235  Q
    |||     | ||||||||||||||||||  |||||||||  ||||||||||| |||||| || |||||||||||| |||||  |||| ||||||||||    
T  26655253 gtttcttggaaatgttgttttgttcctagaaaaattggaatgaataaagttcacatgaaggtagaaataaaatcattaattgttatc-ataaatatcg 26655349  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 17384107 - 17384178
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaattt 118  Q
    ||||||||||||| || | |||||||| |||||||||| || ||| ||||||||  |||||| ||||||||||    
T  17384107 tttcaagtcatatctggagattcctgg-aatatgatagtagaaaatatatattcatatgtttgtttcaaattt 17384178  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 30969760 - 30969879
Alignment:
Q  148 aatgttgttttgttcctaagaaaattggatggaataaagttctcatgaatgtggaaataaaatcaataattactatctataaatatcgcttaat-agtta 246  Q
    |||||||| |||||||||||||||||||  ||||||||||| |||||||  ||| |||||||||| ||||||||||| | || |||||||| || ||| |    
T  30969760 aatgttgtcttgttcctaagaaaattgggaggaataaagttttcatgaagctgggaataaaatcattaattactatccagaactatcgctttatcagtca 30969859  T
Q  247 ttttcaggaatactttaaat 266  Q
    ||  || |||||||||||||    
T  30969860 ttcccatgaatactttaaat 30969879  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 118
Target Start/End: Complemental strand, 12765347 - 12765275
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaattt 118  Q
    |||||||||||||||| |||||| || ||||||| ||||| || ||||||||||| |||||| ||||||||||    
T  12765347 tttcaagtcatatttggaaattcatgagaatatggtagcaagatagatatattccaatgtttgtttcaaattt 12765275  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 195
Target Start/End: Complemental strand, 15914391 - 15914236
Alignment:
Q  46 tttcaagtcatatttgaaaattcctgggaatatgatagcaggaaagatatattcccatgtttatttcaaattt-aaaattttatttctgtgaataaaagt 144  Q
    |||||||||||||||  | |||  |||||||||| |||||||||||||||||| | ||||||  |  |||||| ||||||||||| ||  ||||| ||||    
T  15914391 tttcaagtcatatttagagatttatgggaatatggtagcaggaaagatatatttctatgttttctaaaaattttaaaattttattcctcggaatagaagt 15914292  T
Q  145 tgg-----aatgttgttttgttcctaagaaaattggatggaataaagttctcatga 195  Q
    | |     ||||||||||||||||||||||||||    ||||||||||||||||||    
T  15914291 ttgctggaaatgttgttttgttcctaagaaaattaagaggaataaagttctcatga 15914236  T

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