View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_high_15 (Length: 216)
Name: NF14896_high_15
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 13274773 - 13274975
Alignment:
| Q |
1 |
atactaatcagcaaatagtaattaggagtttttctatatatgtcttcaatatatgccaattgatatgttgccccaagatactaaataaaacttgtattga |
100 |
Q |
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| T |
13274773 |
atactaatcagcaaatagtaattaggagtttttctatatatgtcttcaatatatgccaattgatatgttgccccaagatactaaataaaacttgtatcga |
13274872 |
T |
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| Q |
101 |
acctttcttcctctctctccttctcctggacaaataaaatttctaatttgatgatccattttattgatcagactgatatgccaagcataaacaagaagtt |
200 |
Q |
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| T |
13274873 |
acctttctttctctctctccttctcctggacaaataaaatttctaatttgatgatccattttattgatcagactgatatgccaagcataaacaagaaatt |
13274972 |
T |
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| Q |
201 |
tat |
203 |
Q |
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||| |
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| T |
13274973 |
tat |
13274975 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 55454799 - 55454842
Alignment:
| Q |
76 |
agatactaaataaaacttgtattgaacctttcttcctctctctc |
119 |
Q |
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||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
55454799 |
agatactaaataaaatttgtatcgaacctttcttcctctttctc |
55454842 |
T |
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