View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14896_high_4 (Length: 489)

Name: NF14896_high_4
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14896_high_4
NF14896_high_4
[»] chr5 (3 HSPs)
chr5 (18-458)||(4729558-4730011)
chr5 (352-427)||(12555281-12555356)
chr5 (365-431)||(1825559-1825625)
[»] chr6 (1 HSPs)
chr6 (352-431)||(16408648-16408727)
[»] chr4 (1 HSPs)
chr4 (352-427)||(17784923-17784998)
[»] chr7 (1 HSPs)
chr7 (350-431)||(23375405-23375486)
[»] chr2 (1 HSPs)
chr2 (351-431)||(28485190-28485270)
[»] chr8 (2 HSPs)
chr8 (356-427)||(28422466-28422536)
chr8 (310-420)||(26470589-26470700)
[»] chr1 (2 HSPs)
chr1 (365-432)||(41078613-41078680)
chr1 (371-431)||(17447487-17447547)
[»] chr3 (1 HSPs)
chr3 (382-431)||(3092050-3092099)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Complemental strand, 4730011 - 4729558
Alignment:
Q  18 ctaagaggggtgtttcctacgcgtttatggctccaagatagaggtgtgccatgtccagatggttatccccaatgtgaggctcgttataaaatcgattggc 117  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  4730011 ctaagaggggtgtttcctacgcgtatacggctccaagatagaggtgtgccatgtacagatggttatccccaatgtgaggctcgttataaaattgattggc 4729912  T
Q  118 atcaggcttgtgggataaagtgagtggctcattttctgcggtcgccagttttgcacattgtaatttttctttactttgcaggttacaagtaatatgccat 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4729911 atcaggcttgtgggataaagtgagtggctcattttctgcagtcaccagttttgcacattgtaatttttctttactttgcaggttacaagtaatatgccat 4729812  T
Q  218 gttaacgtagttgtacagctagtgcgcgaagctctttcccaatggaaatctattcgtacaaaagacaatcagggagtgcaccatgtgc------------ 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||                
T  4729811 gttaacgtagttgtacagctagtgcgcgaagctctttcccaatggaaatctattcgtgcaaaagacaatcagggagtgcagcatgtgcatcacgataccg 4729712  T
Q  306 -gaacgaatcatcaacttgtgatcattttcttatgcttttttattcatatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagag 404  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4729711 tgaacgaatcatcaacttgtgatcattttcttatgcttttttattcatatgtttagaagttatgagtagctaatcccctctagattaggtcataaaagag 4729612  T
Q  405 gaacttccatgtaattgtttgattatgctttttggtttcattcttcactgtcca 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4729611 gaacttccatgtaattgtttgattatgctttttggtttcattcttcactttcca 4729558  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 12555281 - 12555356
Alignment:
Q  352 tatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgat 427  Q
    |||||||| || |||||||||| |||| | |||||||||||||||| |||||||| ||||| ||||||||||||||    
T  12555281 tatgtttataaattatgagtagttaattctctctagattaggtcatgaaagaggatcttccttgtaattgtttgat 12555356  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 1825559 - 1825625
Alignment:
Q  365 tatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    |||||||||||||| | || ||| ||||||||| |||||||||||||| | | ||||||||||||||    
T  1825559 tatgagtagctaattctctataggttaggtcatgaaagaggaacttccctttgattgtttgattatg 1825625  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 16408648 - 16408727
Alignment:
Q  352 tatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    ||||||||||  ||||||||| ||||| | |||||| ||||||||| ||||||||||| ||||| |||||||||||||||    
T  16408648 tatgtttagatcttatgagtaactaatcctctctaggttaggtcatgaaagaggaactaccatgaaattgtttgattatg 16408727  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 427
Target Start/End: Complemental strand, 17784998 - 17784923
Alignment:
Q  352 tatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgat 427  Q
    |||||||||||| ||||||||| ||||  ||||||| ||||||||| |||||  ||||||||||||||||||||||    
T  17784998 tatgtttagaagctatgagtagttaattacctctaggttaggtcatgaaagaataacttccatgtaattgtttgat 17784923  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 431
Target Start/End: Complemental strand, 23375486 - 23375405
Alignment:
Q  350 catatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    |||||||||||||  |||||| || |||  | |||||| ||||||||| |||||||||||||| |||||||||| |||||||    
T  23375486 catatgtttagaatatatgagcaggtaaacctctctaggttaggtcatgaaagaggaacttccttgtaattgttcgattatg 23375405  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 28485270 - 28485190
Alignment:
Q  351 atatgtttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    |||||||||| |  |||||||||||||| | |||||| ||||||||| ||||||||| || | ||||||||| ||||||||    
T  28485270 atatgtttaggaactatgagtagctaatcctctctaggttaggtcatgaaagaggaaatttcttgtaattgtctgattatg 28485190  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 28422536 - 28422466
Alignment:
Q  356 tttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgat 427  Q
    |||||||| ||||||||| |||| ||||||||  |||||||| ||||||||||||  |||||||||||||||    
T  28422536 tttagaagctatgagtagataattccctctaggctaggtcatgaaagaggaactt-tatgtaattgtttgat 28422466  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 420
Target Start/End: Original strand, 26470589 - 26470700
Alignment:
Q  310 gaatcatcaacttgtgatcattttcttatgcttttttattcatatg--tttagaagttatgagtagctaatgccctctagattaggtcataaaagaggaa 407  Q
    |||||||||||  |||||| |||||| ||||| |||||||||||||  |||||||| ||| |||| |||||   |||||| ||| |||||   |||||||    
T  26470589 gaatcatcaacgggtgatccttttctcatgctattttattcatatgtatttagaagctataagtatctaatcatctctaggttatgtcat-gtagaggaa 26470687  T
Q  408 cttccatgtaatt 420  Q
    ||||| |||||||    
T  26470688 cttccttgtaatt 26470700  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 432
Target Start/End: Original strand, 41078613 - 41078680
Alignment:
Q  365 tatgagtagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatgc 432  Q
    |||||| ||||||| | |||||| ||||||||| |||||||||||||| ||||||  |||||||||||    
T  41078613 tatgagcagctaatcctctctaggttaggtcatgaaagaggaacttccctgtaatattttgattatgc 41078680  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 17447487 - 17447547
Alignment:
Q  371 tagctaatgccctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    |||||||| | |||||| |||||  || |||||||||||||||||| ||||||||||||||    
T  17447487 tagctaattctctctagtttaggctatgaaagaggaacttccatgtgattgtttgattatg 17447547  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 3092099 - 3092050
Alignment:
Q  382 ctctagattaggtcataaaagaggaacttccatgtaattgtttgattatg 431  Q
    |||||| ||||||||| |||||||||||||| | ||| ||||||||||||    
T  3092099 ctctaggttaggtcatgaaagaggaacttccttttaactgtttgattatg 3092050  T

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