View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14896_low_1 (Length: 962)

Name: NF14896_low_1
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14896_low_1
NF14896_low_1
[»] chr4 (4 HSPs)
chr4 (713-949)||(37876681-37876919)
chr4 (290-558)||(37876181-37876454)
chr4 (554-698)||(37876490-37876636)
chr4 (179-260)||(37876099-37876180)
[»] chr2 (4 HSPs)
chr2 (713-949)||(23894762-23895000)
chr2 (290-558)||(23895227-23895500)
chr2 (554-698)||(23895045-23895191)
chr2 (179-260)||(23895501-23895582)
[»] chr8 (7 HSPs)
chr8 (320-495)||(18106881-18107053)
chr8 (179-294)||(18106565-18106679)
chr8 (30-174)||(18082374-18082509)
chr8 (497-558)||(18138725-18138786)
chr8 (497-558)||(18097565-18097626)
chr8 (125-174)||(18139411-18139460)
chr8 (122-174)||(18096791-18096843)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 713 - 949
Target Start/End: Original strand, 37876681 - 37876919
Alignment:
Q  713 atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg 812  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876681 atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg 37876780  T
Q  813 taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaata--atgctagcaa 910  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  37876781 taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataatatgctagcaa 37876880  T
Q  911 cttcaaactattcctaagacccttaaagccacccatatt 949  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37876881 cttcaaactattcctaagacccttaaagccacccatatt 37876919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 290 - 558
Target Start/End: Original strand, 37876181 - 37876454
Alignment:
Q  290 tagttgatgcacaatagacttgnnnnnnnnaatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcatt 384  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||| |  |||| |||||||||||||||||||||||||    
T  37876181 tagttgatgcacaatagacttgttttttt-aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcatt 37876278  T
Q  385 ataccttctccatgtggggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcct 484  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  37876279 ataccttctccatgtgggg-gtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcct 37876377  T
Q  485 gatttta---tattattattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 558  Q
    |||||||   |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37876378 gattttatattattattattatagattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat 37876454  T

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Target: chr4; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 554 - 698
Target Start/End: Original strand, 37876490 - 37876636
Alignment:
Q  554 ttgatctagatt--gctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt 651  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876490 ttgatctagattttgctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt 37876589  T
Q  652 tcccattttaaaatgagtcaaaggagtaacgaatcaatattcttgca 698  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  37876590 tcccattttaaaatgagtcaaaggagtaacaaatcaatattcttgca 37876636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 37876099 - 37876180
Alignment:
Q  179 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37876099 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 37876180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 713 - 949
Target Start/End: Complemental strand, 23895000 - 23894762
Alignment:
Q  713 atcactctaagtctattaacaaataatgacacaaacaatcattcatgcgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg 812  Q
    |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895000 atcactctaagtctattaacaaataatggcacaaacaatcattcttgtgacacagaaaacctctagattctgctaatctttacctgttcatataaaaatg 23894901  T
Q  813 taaacaggtcattccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccacggcattcagattgctaaaagaata--atgctagcaa 910  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  23894900 taaacaggtcgttccttattcgttcgttcggaaaccttaccccattcacgaaattaagaaccatggcattcagattgctaaaagaataatatgctagcaa 23894801  T
Q  911 cttcaaactattcctaagacccttaaagccacccatatt 949  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23894800 cttcaaactattcctaagacccttaaagccacccatatt 23894762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 290 - 558
Target Start/End: Complemental strand, 23895500 - 23895227
Alignment:
Q  290 tagttgatgcacaatagacttgnnnnnnnnaatgttagatgaactcaattgtag---gtttcattcca--gtcttgtgtgttcctttgcaaaccggcatt 384  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||   ||||||||| |  |||| |||||||||||||||||||||||||    
T  23895500 tagttgatgcacaatagacttgttttttt-aatgttagatgaactcaattgtagtaggtttcattctatggtct-gtgtgttcctttgcaaaccggcatt 23895403  T
Q  385 ataccttctccatgtggggggtcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcct 484  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  23895402 ataccttctccatgtggggg-tcttcatattgcatagtttaactatttagctttatgatatagttgttatgcgcataaaagggaagttttatgaatgcct 23895304  T
Q  485 gattttatattatta---ttatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 558  Q
    |||||||||||||||   |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  23895303 gattttatattattattattatagattttgagacatgaaatgtctaaaagactccaatggtaaattatagttttgat 23895227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 554 - 698
Target Start/End: Complemental strand, 23895191 - 23895045
Alignment:
Q  554 ttgatctagatt--gctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt 651  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895191 ttgatctagattttgctttcttttctctgctctatttcagtactctcatgttctcccttttctcaaagccttctttataataaacattttgtgccaaatt 23895092  T
Q  652 tcccattttaaaatgagtcaaaggagtaacgaatcaatattcttgca 698  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  23895091 tcccattttaaaatgagtcaaaggagtaacaaatcaatattcttgca 23895045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 23895582 - 23895501
Alignment:
Q  179 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895582 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgc 23895501  T

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Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 320 - 495
Target Start/End: Original strand, 18106881 - 18107053
Alignment:
Q  320 aatgttagatgaactcaattgtaggtttcattccagtcttgtgtgttcctttgcaaaccggcattataccttctccatgtggggggtcttcatattgcat 419  Q
    |||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| |||||||||||||||| || ||||||| | ||||||||||||      
T  18106881 aatgttagatgaactcaattataggtttcatttcggtct-gtgtgttcctttgcacaccggcattataccttttctatgtgggag-tcttcatattgctc 18106978  T
Q  420 agtttaactatttagctttatgatatagttgttatgcgcataaaagtgatgttttatgaatgcctgattttatatt 495  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||| || | |||||| ||| |||||||||||||    
T  18106979 agtttaactattaagctttatgatataggtgttatgcgcataaaagggaagctttatg-atgtctgattttatatt 18107053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 18106565 - 18106679
Alignment:
Q  179 tagttagttctatcttttgttgtagacggccttgatattgtttagtagtgttattattttggttatacacatatttgactgcattatttctacaaaattg 278  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18106565 tagttagttctatcttttgtcgtagacggccttgatattgtt-agtagtattattattttggcgatacacatatttgactgcattatttctacaaaattg 18106663  T
Q  279 aagatttatcttagtt 294  Q
    ||| ||||||||||||    
T  18106664 aagctttatcttagtt 18106679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 30 - 174
Target Start/End: Complemental strand, 18082509 - 18082374
Alignment:
Q  30 attaccatgtgcgaacaaactaactctccattaactccaatttcctgaactctttgggtacttaaatcaatccagttccagcctatatcataagaatctt 129  Q
    ||||||||||||||||||| | ||||||| |||||||||||| ||| |||||||||||||||||||||||       ||||||||  ||   ||||||||    
T  18082509 attaccatgtgcgaacaaaatgactctccgttaactccaattacctcaactctttgggtacttaaatcaa------accagcctagctc---agaatctt 18082419  T
Q  130 cttccctgaagaatacacggttcttgttccctactgtgacaggac 174  Q
    ||| ||||||||||| |||||||||||||||||||| || |||||    
T  18082418 ctttcctgaagaatatacggttcttgttccctactgagataggac 18082374  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 18138786 - 18138725
Alignment:
Q  497 ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 558  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||||    
T  18138786 ttattatagattttgagacatggaatctctaaaagactccaatgctaaattgtagttttgat 18138725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 18097565 - 18097626
Alignment:
Q  497 ttattatagattttgagacatggtatgtctaaaagactccaatggtaaattatagttttgat 558  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||||||    
T  18097565 ttattatagattttgagacatggaatgtctaatagacttcaacgctaaattatagttttgat 18097626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 18139411 - 18139460
Alignment:
Q  125 atcttcttccctgaagaatacacggttcttgttccctactgtgacaggac 174  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||    
T  18139411 atcttcttccctgaagaatatacggttcttgttccctactgagataggac 18139460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 18096843 - 18096791
Alignment:
Q  122 agaatcttcttccctgaagaatacacggttcttgttccctactgtgacaggac 174  Q
    |||||||||||||||||| |||| |||||||||||||||||||| || |||||    
T  18096843 agaatcttcttccctgaaaaatatacggttcttgttccctactgagataggac 18096791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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