View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_10 (Length: 369)
Name: NF14896_low_10
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 37604733 - 37604400
Alignment:
| Q |
15 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagtgaagtctgcata |
114 |
Q |
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| T |
37604733 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagcgaagtctgcata |
37604634 |
T |
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| Q |
115 |
catgtatgatatggaaactctcattgataatgtggagtatagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaagnn |
214 |
Q |
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| T |
37604633 |
catgtatgatatggaaactctcattcataatgtggagtatagaatgccgggagattggacgagaatgtggaatctgcacatacctcaacggatcaaagtt |
37604534 |
T |
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| Q |
215 |
nnnnnatggagtttgttgaggggtgtactcccttcgcatatatgagacttcaaggaannnnnnnttccttcttcggactactgcccctgctgtgagacca |
314 |
Q |
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| T |
37604533 |
tttttatggaggttgttgaggggtgttctcccttcgcatatataagacttcaaggaa-ggggggtcccttcttcggactactgccccttctgtgagacca |
37604435 |
T |
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| Q |
315 |
attatgagaatgattggcacatttttatcggatgt |
349 |
Q |
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| T |
37604434 |
attatgagaatgattggcacatttttatcggatgt |
37604400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 349
Target Start/End: Complemental strand, 8178980 - 8178788
Alignment:
| Q |
153 |
atagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaagnnnnnnnatggagtttgttgaggggtgtactcccttcgca |
252 |
Q |
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| T |
8178980 |
atagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaagttttcttatggagggtgcttaggggtgttcttcctacgc- |
8178882 |
T |
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| Q |
253 |
tatatgagacttcaaggaannnnnnnttccttcttcggactactgcccctgctgtgagaccaattatgagaatgattggcacatttttatcggatgt |
349 |
Q |
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| T |
8178881 |
-gaatgagacttcaag--atagggggtcccttgttcggattgctgcccccattgtgagaccaattatgagaatgattggcacgttttcatcggatgt |
8178788 |
T |
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