View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14896_low_16 (Length: 223)

Name: NF14896_low_16
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14896_low_16
NF14896_low_16
[»] chr6 (3 HSPs)
chr6 (22-207)||(2879810-2879995)
chr6 (92-208)||(35023633-35023749)
chr6 (41-206)||(33353896-33354058)
[»] scaffold0144 (1 HSPs)
scaffold0144 (40-208)||(40224-40392)
[»] chr4 (7 HSPs)
chr4 (76-208)||(53436905-53437036)
chr4 (92-208)||(46671342-46671458)
chr4 (115-205)||(16420163-16420253)
chr4 (118-205)||(55585154-55585241)
chr4 (167-208)||(53438428-53438469)
chr4 (45-83)||(53436502-53436540)
chr4 (94-177)||(987397-987480)
[»] chr7 (2 HSPs)
chr7 (92-208)||(23409579-23409695)
chr7 (115-207)||(9954113-9954205)
[»] chr2 (3 HSPs)
chr2 (92-203)||(41362948-41363059)
chr2 (40-174)||(28633687-28633821)
chr2 (134-208)||(44679929-44680003)
[»] scaffold0434 (1 HSPs)
scaffold0434 (115-211)||(11089-11185)
[»] scaffold0049 (1 HSPs)
scaffold0049 (115-208)||(38709-38802)
[»] scaffold0007 (1 HSPs)
scaffold0007 (115-208)||(275570-275663)
[»] chr3 (3 HSPs)
chr3 (115-208)||(27088750-27088843)
chr3 (145-207)||(11773687-11773749)
chr3 (115-167)||(11776443-11776495)
[»] chr5 (1 HSPs)
chr5 (56-112)||(32837669-32837725)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 2879810 - 2879995
Alignment:
Q  22 gcagggtgacgttggtcttgtcggaaaatttgtccggtttattctcttttctttgttgtttattttctttatcatgagtagctaattttcatgttgttag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879810 gcagggtgacgttggtcttgtcggaaaatttgtccggtttattctcttttctttgttgtttattttctttatcatgagtagctaattttcatgttgttag 2879909  T
Q  122 ggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879910 ggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctct 2879995  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 35023633 - 35023749
Alignment:
Q  92 atcatgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaat 191  Q
    |||||||||||||||||||  ||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  35023633 atcatgagtagctaatttttttgttgttagggatgagattatctagatgataacttttgttctatgactttcttttgattattgaataagtttattgaat 35023732  T
Q  192 catttttcttatctctg 208  Q
    |||||||||||||||||    
T  35023733 catttttcttatctctg 35023749  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 33353896 - 33354058
Alignment:
Q  41 gtcggaaaatttgtccggtttattctcttttctttgttgtttattttctttatcatgagtagctaattttcatgttgttagggatgagagtatctagatg 140  Q
    |||||||| ||  |||||||||||||||||||||||||   |||||   |||||||||||||||||  | || ||| || ||||||||  || |||||||    
T  33353896 gtcggaaatttcttccggtttattctcttttctttgtt---tatttgtcttatcatgagtagctaaactccaagttattggggatgagtatacctagatg 33353992  T
Q  141 acaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctc 206  Q
    |  |||||||| || ||||||  || || ||||||| |||  ||||||||| ||||||||||||||    
T  33353993 aatacttttgtcatgtgatttgattatgtttattgatgaaacttattgaattatttttcttatctc 33354058  T

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Target: scaffold0144 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 40392 - 40224
Alignment:
Q  40 tgtcggaaaatttgtccggtttattctcttttctttgttgtttattttctttatcatgagtagctaattttcatgttgttagggatgagagtatctagat 139  Q
    |||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||  || |   ||||| ||||||||| |||||||||    
T  40392 tgtcagaaaatttgtctggtttattctcttttctttgttgtttgttttctttaccatgagtagctagattcccaattgtttgggatgagattatctagat 40293  T
Q  140 gacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292 gacaacttttgttctatgactttcttttgattattgaagaagtttattgaatcatttttcttatctctg 40224  T

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Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 53436905 - 53437036
Alignment:
Q  76 gttgtttattttctttatcatgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||    
T  53436905 gttgtttattttctttatcatgagtagctaattttcatgttgttagggatgagagtatcgagatgacaacttttgttatatgacttt-ttctgattattg 53437003  T
Q  176 aagaagtttattgaatcatttttcttatctctg 208  Q
    |||||||||||||||||||||||||||||||||    
T  53437004 aagaagtttattgaatcatttttcttatctctg 53437036  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 46671458 - 46671342
Alignment:
Q  92 atcatgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaat 191  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||| | ||| |||||||||||||| |||||||||||||    
T  46671458 atcatgagtagctaattttcttgttgttagggatgagattatctaaatgacaacttttgttctataactttattttgattattgaataagtttattgaat 46671359  T
Q  192 catttttcttatctctg 208  Q
    |||||||||||||||||    
T  46671358 catttttcttatctctg 46671342  T

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Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 16420163 - 16420253
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatct 205  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  16420163 ttgttagggatgagattatctagatgacaacttttgttctatgactttaatttgattattgaagaagtttattgaatcatttttcttatct 16420253  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 55585241 - 55585154
Alignment:
Q  118 ttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatct 205  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||    
T  55585241 ttagggatgagattatctagatgacaacttttgtcatatgactttattttgattattgatgaagtttattgaatcatttttcttatct 55585154  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 53438428 - 53438469
Alignment:
Q  167 tgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53438428 tgattattgaagaagtttattgaatcatttttcttatctctg 53438469  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Original strand, 53436502 - 53436540
Alignment:
Q  45 gaaaatttgtccggtttattctcttttctttgttgttta 83  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53436502 gaaaatttgtccggtttattctcttttctttgttgttta 53436540  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 987397 - 987480
Alignment:
Q  94 catgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaa 177  Q
    ||||||| ||||||||   | ||||||| ||||| | ||| |||||||||||||||||  ||||||||| ||||||||||||||    
T  987397 catgagtggctaatttctttattgttagagatgaaattatttagatgacaacttttgtactatgattttattttgattattgaa 987480  T

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Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 23409579 - 23409695
Alignment:
Q  92 atcatgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaat 191  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23409579 atcatgagtagctaattttcgtgttgttagggatgagattatctagatgacaacttttgttctatgattttcttttgattattgaagaagtttattgaat 23409678  T
Q  192 catttttcttatctctg 208  Q
    |||||||||||||||||    
T  23409679 catttttcttatctctg 23409695  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 9954205 - 9954113
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctct 207  Q
    ||||||||||||||| ||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  9954205 ttgttagggatgagattatctagatgacaacttttgtcatattactttattttgattattgatgaagtttattgaatcatttttcttatctct 9954113  T

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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 41362948 - 41363059
Alignment:
Q  92 atcatgagtagctaattttcatgttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaat 191  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  41362948 atcatgagtagctaatttttatgttgttatggatgagattatctagatgacaacttttgttctatgactttcttttgattattgaagaagtttattgaat 41363047  T
Q  192 catttttcttat 203  Q
    ||||||||||||    
T  41363048 catttttcttat 41363059  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 28633687 - 28633821
Alignment:
Q  40 tgtcggaaaatttgtccggtttattctcttttctttgttgtttattttctttatcatgagtagcta-attttcatgttgttagggatgagagtatctaga 138  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||| | ||||||||    
T  28633687 tgtcagaaaatttgtctggtttattctcttttctttgttgtttattttctttatcatgagtagctagattctca-attgttagggatgaaattatctaga 28633785  T
Q  139 tgacaacttttgttatatgattttcttttgattatt 174  Q
    |||||||||||||| ||||| |||||||||||||||    
T  28633786 tgacaacttttgttctatgactttcttttgattatt 28633821  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 208
Target Start/End: Complemental strand, 44680003 - 44679929
Alignment:
Q  134 ctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    |||||||| |||||||||||||||| ||| || | |||||||| |||||||||||||||||||||||||||||||    
T  44680003 ctagatgaaaacttttgttatatgactttattctaattattgatgaagtttattgaatcatttttcttatctctg 44679929  T

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Target: scaffold0434 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 11089 - 11185
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctgctc 211  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11089 ttgttagggatgagattatctagatgacaacttttgtcatatgactttattttgattattgatgaagtttattgaatcatttttcttatctctgctc 11185  T

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Target: scaffold0049 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 38802 - 38709
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  38802 ttgttagggatgagattatctagatgacaacttttgtcatatgactttattttgattattgatgaagtttattgaatcatttttcttatctctg 38709  T

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Target: scaffold0007 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 275570 - 275663
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  275570 ttgttagggatgagattatctagatgacaacttttgttctatgactttaatttgattattgaagaagtttattgaatcatttttcttatctctg 275663  T

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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 27088843 - 27088750
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctctg 208  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||| || |||||||||| |||||||||| ||||||||||||||||||||    
T  27088843 ttgttagggatgagattatctagatgacaacttttgttctatgactttattctgattattgatgaagtttattaaatcatttttcttatctctg 27088750  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 11773749 - 11773687
Alignment:
Q  145 cttttgttatatgattttcttttgattattgaagaagtttattgaatcatttttcttatctct 207  Q
    ||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  11773749 cttttgtcatatgactttattttgattattgatgaagtttattgaatcatttttcttatctct 11773687  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 11776495 - 11776443
Alignment:
Q  115 ttgttagggatgagagtatctagatgacaacttttgttatatgattttctttt 167  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  11776495 ttgttagggatgagattatctagatgacaacttttgtcatatgactttttttt 11776443  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 32837669 - 32837725
Alignment:
Q  56 cggtttattctcttttctttgttgtttattttctttatcatgagtagctaattttca 112  Q
    ||||||||| ||||| || ||||||||||||  |||||||||  |||||||||||||    
T  32837669 cggtttattttctttactatgttgtttatttcttttatcatgtctagctaattttca 32837725  T

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