View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_2 (Length: 598)
Name: NF14896_low_2
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 9 - 584
Target Start/End: Original strand, 30432901 - 30433478
Alignment:
| Q |
9 |
aaaataacctctgcagtaaaatcaattattgtcgggaaacaaaaattgagatcgatacaaaacaggggaaaacagttgcattgtttatgatatacccaag |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30432901 |
aaaataacctctgcagtaaaatcaattattgttgggaaacaaaaattgagatcgatacaaaacaggggaaaacagttgcattgtttatgatatacccaag |
30433000 |
T |
|
| Q |
109 |
gaataaactgctactgattggtaatctacctgaaacagctgaacctctcaggaaaaggaagactgcgctgagcggaaaaaatttatgttcaaaacagtaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30433001 |
gaataaactgctactgattggtaatctacctgaagcagctgaacctctcaggaaaaggaagactgtgctgagcggaaaaaatttatgttcaaaacagtaa |
30433100 |
T |
|
| Q |
209 |
aaactgtcgccgcattatgctgatgcaattctgcctctcagccatgtatatact-aaacatcatgaagggaaagaatttgctaaagaaaatagtgcataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30433101 |
aaactgtcgccgcattatgctgatgcaattctgcctctcagccatgtatatactaaaacatcatgaagggaaagaatttgctaaagaaaatagtgcataa |
30433200 |
T |
|
| Q |
308 |
cataagtattttaaatcagaaaattcaatagacaactcttgtcgaaaatgcatacaatcttaaacaaaaacagtttttgttcagctttaaacc-aactat |
406 |
Q |
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|||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30433201 |
cataagtattttgaatcagcaaattcaatagacaacttttgtcgaaaatgcatacaatcttaaacaaaaacagtttttgttcagctttaaaccaaactat |
30433300 |
T |
|
| Q |
407 |
gaatgagtgcaaatgcaacatctatcatttttaacttttatgttttcagaaagtttaaatataactatttagaatatctctcttggttatgttattgaag |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30433301 |
gaatgagtgcaaatgcaacatctatcatttttaacttttatgttttcagaaagtttaaatataactatttagaatatctctcttggttaagttattgaag |
30433400 |
T |
|
| Q |
507 |
gactttcaagcggttttctttagtcattggttcaatgtcaaataagcccaaatctatcgcctgtggggttttcaggtg |
584 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
30433401 |
gactttcaagcggttttctttagtcattggttcaatgtcaaataagcacaaatctatcgtctgtggggttttcaggtg |
30433478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 43060041 - 43059848
Alignment:
| Q |
35 |
tattgtcgggaaacaaaaattgagatcgatacaaaacaggggaaaacagttgcattgtttatgatatacccaaggaataaactgctactgattggtaatc |
134 |
Q |
| |
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||||||| |||||||||||| | || |||||||||||| ||||||||| |||| ||| || | | ||||||||||||||||||||| || |||||| |
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| T |
43060041 |
tattgtcaggaaacaaaaatccatattgatacaaaacagaggaaaacagctgcaccgttcattacagacccaaggaataaactgctacagacgagtaatc |
43059942 |
T |
|
| Q |
135 |
tacctgaaacagctgaacctctcaggaaaaggaagactgcgctgagcggaaa-aaatttatgttcaaaacagtaaaaactgtcgccgcattatgctgatg |
233 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||| ||||| || ||| || |||||| |||| ||||| ||||| |||||||| |||| |
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| T |
43059941 |
tacc---------tgaacctctcaggaaaaggaagact--actgagtggaaacaattttttgctcaaaagagtacaaactctcgcctcattatgcggatg |
43059853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 492 - 551
Target Start/End: Complemental strand, 43059641 - 43059582
Alignment:
| Q |
492 |
gttatgttattgaaggactttcaagcggttttctttagtcattggttcaatgtcaaataa |
551 |
Q |
| |
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|||| ||||||| ||||||||||| | ||||| ||||||||||||||||||| ||||||| |
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| T |
43059641 |
gttaagttattgtaggactttcaaacagttttgtttagtcattggttcaatggcaaataa |
43059582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 43059830 - 43059711
Alignment:
| Q |
286 |
tgctaaagaaaatagtgcataacataa---gtattttaaatcagaaaattcaatagacaactcttgtcgaaaatgcatacaatcttaaacaaaaa-cagt |
381 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||| ||| | ||||| ||||||| | | |||| |||||||||||||||||||| |||| || |
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| T |
43059830 |
tgctaaagaaaataatgcagcacataattagtattttgaattcgcaaatttaatagaccaattttgtgaaaaatgcatacaatcttaaaataaaatcatc |
43059731 |
T |
|
| Q |
382 |
ttttgttcagctttaaacca |
401 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
43059730 |
ttttgttcagctttaaacca |
43059711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 12911968 - 12912076
Alignment:
| Q |
85 |
tgcattgtttatgatatacccaaggaataaactgctactgattggtaatctacctgaaacagctgaacctctcaggaaaaggaagactgcgctgagcgga |
184 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
12911968 |
tgcattgtttatgatagaggcaaggaataaactgctactgattagtaatctacctgaaacacctgaacctctcaggaaaaggaagattgcgctgagcgga |
12912067 |
T |
|
| Q |
185 |
aaaaattta |
193 |
Q |
| |
|
|| |||||| |
|
|
| T |
12912068 |
aagaattta |
12912076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 222 - 401
Target Start/End: Complemental strand, 1531721 - 1531538
Alignment:
| Q |
222 |
attatgctgatgcaatt-ctgcctctcagccatgtatatactaaac-atcatgaagggaaagaatttgctaaagaaaatagtgcataacataagtatttt |
319 |
Q |
| |
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|||||| |||||||||| |||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
1531721 |
attatgatgatgcaattgctgcctctcaaccatgtatctactaaaccatcatgaaaggaaataatttgctaaagaaaatagtgcagaacataagtatttg |
1531622 |
T |
|
| Q |
320 |
aaatcagaaaattcaatagacaactcttgtcgaaaatgcatacaatct--taaacaaaaacagtttttgttcagctttaaacca |
401 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
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| T |
1531621 |
gaatcttcaaattcaatagacaacttttgcagaaaatgcatacaatctaaaaaataaaaacaatttttgttccgcattaaacca |
1531538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 222 - 401
Target Start/End: Complemental strand, 26850569 - 26850386
Alignment:
| Q |
222 |
attatgctgatgcaatt-ctgcctctcagccatgtatatactaaac-atcatgaagggaaagaatttgctaaagaaaatagtgcataacataagtatttt |
319 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| || |||||||| |||||||| |||||||||| |||||||||||||| ||| ||||||||||||| |
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|
| T |
26850569 |
attatgctgatgcaattgctgcctctcaaccatgcatctactaaactatcatgaaaggaaagaattcgctaaagaaaatagggcagaacataagtatttg |
26850470 |
T |
|
| Q |
320 |
aaatcagaaaattcaatagacaactcttgtcgaaaatgcatacaatctt--aaacaaaaacagtttttgttcagctttaaacca |
401 |
Q |
| |
|
|||| ||||| ||||||||||| ||| |||||||| ||||||||| ||| || |||| |||||||||||| |||||||| |
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|
| T |
26850469 |
gaatcttcaaatttaatagacaacttttgcagaaaatgcttacaatcttaaaaataataacaatttttgttcagcattaaacca |
26850386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 26850351 - 26850302
Alignment:
| Q |
398 |
accaactatgaatgagtgcaaatgcaacatctatcatttttaacttttat |
447 |
Q |
| |
|
||||||||| ||| ||| |||||||||| || |||||||||||||||||| |
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|
| T |
26850351 |
accaactataaataagtacaaatgcaacttcaatcatttttaacttttat |
26850302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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