View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_3 (Length: 565)
Name: NF14896_low_3
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 60 - 322
Target Start/End: Original strand, 37603975 - 37604233
Alignment:
| Q |
60 |
ttatgtaaatcattatagtatatgatttcagcaaaaaatattagtatataattttgcccccgcttaacaatatttctggatctgaccctgagagttccgt |
159 |
Q |
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| T |
37603975 |
ttatgtaaattattatagtatatgatttcagcaaaaaatattagtatataattttgcccccgcttaacaatatttctggatctgacc-tgagagttccgt |
37604073 |
T |
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| Q |
160 |
atacacaatccaataccgaagcatttctgatcaccaagtagcgctatgtccacgttacatttgacaaatccttcctctggtggcagccacctgatattat |
259 |
Q |
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| T |
37604074 |
atacacaatccaataccgaagcatttctgatcaccaagtagcgctatgtcgacgttacatttgacaaatccttcctccggtggcagccacctgatattat |
37604173 |
T |
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| Q |
260 |
gctgctcttcctgtttctgttcgccatatttttggtgttttaggacataatttcccactgata |
322 |
Q |
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| T |
37604174 |
gctgctctccctgtttctgttcgccatatttttggtgttttaggac---atttcccactgata |
37604233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 402 - 565
Target Start/End: Original strand, 37604242 - 37604405
Alignment:
| Q |
402 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
501 |
Q |
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| T |
37604242 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
37604341 |
T |
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| Q |
502 |
tacctgctgttatcgtatcccataacccagcttcaatccaaacctgattccccacttcacatcc |
565 |
Q |
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| T |
37604342 |
tacctgctgttatcgtatcccataacctagcttcaatccaaacctgtttccccacttcacatcc |
37604405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 37603912 - 37603961
Alignment:
| Q |
17 |
aatttttgtagtccctctgcttttttagtgatgataatattacttatgta |
66 |
Q |
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| T |
37603912 |
aatttttgtagtccctctgcttttttagtgatgataatattacttatgta |
37603961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 32082768 - 32082816
Alignment:
| Q |
92 |
aaaaaatattagtatataattttgcccccgcttaacaatatttctggat |
140 |
Q |
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| T |
32082768 |
aaaaaaaattagtatatgattttgctcccacttaacaatatttatggat |
32082816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 148 - 541
Target Start/End: Original strand, 8178378 - 8178769
Alignment:
| Q |
148 |
tgagagttccgtatacacaatccaataccgaagcatttctgatcaccaagtagcgctatgtccacgttacatttgacaaatccttcctctggtggcagcc |
247 |
Q |
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| T |
8178378 |
tgagagtttcgtatacacataccaacaccgaagcatttctgatcactaaacagtgctgcgtcgacattgcacttgacatatccttgatccggtggctgcc |
8178477 |
T |
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| Q |
248 |
acctgatattatgctgctcttcctgtttctgttcgccatatttttggtgttttaggacataatttcccactgataaatagctttacgcgctaactggaca |
347 |
Q |
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| T |
8178478 |
agctgatgttttgttgctgttcctgctgctgttcactgtttttttggcatttacgagcat--tctgccactgaaaaataccttcgcgcgctagctgtaca |
8178575 |
T |
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| Q |
348 |
acaacaccaacattctgaacttcgccctcccaaactttatcattacggcaccttcataaacaccacaacagagctgctatgtccctgcataattcatttg |
447 |
Q |
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| T |
8178576 |
gccatacgaacattctgtacctcgccttcccacactttatcattacggcggcgccatatgcaccataacaccgctgctatgtccctgcacaaatgatttt |
8178675 |
T |
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| Q |
448 |
gcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtatcccataacccagcttcaatcca |
541 |
Q |
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| T |
8178676 |
gcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctgctattacatcccatagcccagcttcaatcca |
8178769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 24875803 - 24875723
Alignment:
| Q |
62 |
atgtaaatcattatagtatatgatttcagcaaaaaatattagtatataattttgcccccgcttaacaatatttctggatctg |
143 |
Q |
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| T |
24875803 |
atgtacattattatagtatatgatttcattaaaaaa-attagtatatgattttgcacctgcttaacaatatttctagatctg |
24875723 |
T |
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