View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_5 (Length: 466)
Name: NF14896_low_5
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 91 - 447
Target Start/End: Complemental strand, 37135491 - 37135135
Alignment:
| Q |
91 |
cctgagtagccattcgagcccatttgtttccaagcttagcatgaagttccatgatgattttttcttcctcttcagaaaatgaaccctttttaagattcgg |
190 |
Q |
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| T |
37135491 |
cctgagtagccattcgagcccatttgtttccaagcttagcatgaagttcaatgatgattttttcttcctcttcagaaaatgaaccctttttaagattcgg |
37135392 |
T |
|
| Q |
191 |
cctcagatgattagcccatctaagtctgcagctttttccacaccttaacaatcctgaattcttctgaacaaaattccaattcccttcaccatgcttattc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135391 |
cctcagatgattagcccatctaagtctgcagctttttccacaccttaacaatcctgaattcttctgaacaaaattccaattcccttcaccatgcttattc |
37135292 |
T |
|
| Q |
291 |
acgtactctgtcaaaatcatgtcttcatgtggggtccacggtcccttcttcatgccagttctagcatcaacatcgtcttttgatgaatcaatgtcaacct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135291 |
acgtactctgtcaaaatcatgtcttcatgtggggtccacggtcccttcttcatgccagttctagcatcaacatcgtcttttgatgaatcaatgtcaacct |
37135192 |
T |
|
| Q |
391 |
caacattttcatcgttgttcgagatcgttttcgccataattaatttaccacctttgc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135191 |
caacattttcatcgttgttcgagatcgttttcgccataattaatttaccacctttgc |
37135135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 248
Target Start/End: Original strand, 33732242 - 33732280
Alignment:
| Q |
210 |
ctaagtctgcagctttttccacaccttaacaatcctgaa |
248 |
Q |
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| T |
33732242 |
ctaagtctgcagctttttccacaccttaacaagcctgaa |
33732280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 232
Target Start/End: Original strand, 20740879 - 20741013
Alignment:
| Q |
98 |
agccattcgagcccatttgtttccaagcttagcatgaagttccatgatgattttttcttcctcttcagaaaatgaaccctttttaagattcggcctcaga |
197 |
Q |
| |
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||||||||||||||||||||| |||| | |||||| ||||| | |||||||| ||||| || | |||||||| ||| || || | || || || | | |
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| T |
20740879 |
agccattcgagcccatttgttaccaaattgagcatggagttcaacaatgattttctcttcttcatgagaaaatgcacctttcttcaagttgggtcttaaa |
20740978 |
T |
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| Q |
198 |
tgattagcccatctaagtctgcagctttttccaca |
232 |
Q |
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||||||||||||||||| || || ||||| ||||| |
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| T |
20740979 |
tgattagcccatctaagcctacaacttttcccaca |
20741013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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