View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_7 (Length: 430)
Name: NF14896_low_7
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 64 - 403
Target Start/End: Original strand, 42002213 - 42002553
Alignment:
| Q |
64 |
cgaaagtgaaaattgggcatgtaaaacacatgagannnnnnngtcatagttattttattaaaatcccaatctccacgtattgtaatatcattaccaaact |
163 |
Q |
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| T |
42002213 |
cgaaagtgaaaactgggcatgtaaaacacatgagatttttttgtcagagttattttattaaaatcccaatctccacgtattgtaatatcattaccaaact |
42002312 |
T |
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| Q |
164 |
catctttgctcacttggacaaaacaaatgagttatgatattttttggtcacttgatttttcgatatgttacagaaaaacgtcaaagtaagtagtgattct |
263 |
Q |
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| T |
42002313 |
catctttgctcacttggagaaaacaaatgagttatgatattttttggtcacttgatttttcgatatgttacagaaaaacgtcaaagtaagtagtgattct |
42002412 |
T |
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| Q |
264 |
gacaattcttttgaaatgttacggaaaaaatgttgtaaaatcccacatactgaaaaca-tttttctaataaaataacattccaatatttgaccattgaat |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42002413 |
gacaattcttttgaaatgttacggaaaaaatgttgtaaaatcccacatattgaaaacattttttctaataaaataacattccaatatttgaccattgaat |
42002512 |
T |
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| Q |
363 |
tgaattgatttcttaaatctaaaatgaaattcgttagaaaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42002513 |
agaattgatttcttaaatctaaaatgaaattcgttagaaaa |
42002553 |
T |
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