View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14896_low_8 (Length: 417)
Name: NF14896_low_8
Description: NF14896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14896_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 417
Target Start/End: Complemental strand, 26400473 - 26400062
Alignment:
| Q |
6 |
aaaaattataaacgtttctgcacgtgatgaaatcatatttgaaattggttaacatgtccttatgcataagttgaaatacaaatatgaatggtatttttca |
105 |
Q |
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| T |
26400473 |
aaaaattctaaacgtttctgcgcgtgatgaaatcatatttgaaattggttaacatgtccttatgcataagttgaaatacaaatatgagtggtatttttca |
26400374 |
T |
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| Q |
106 |
tcatttgtaaatgctagctgttggcttttgccaagtctatattttatgtattgaccagaaaaattatatgctcaaaccctaataattttttgattgattt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26400373 |
tcatttgtaaatgctagctgttggcttttgccaagtctatattttatgtattgaccagaaaaattatatgctcaaaccctaataattttttgattcattt |
26400274 |
T |
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| Q |
206 |
atgataacatattttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcactcannnnnnnnnnngtgcc |
305 |
Q |
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| T |
26400273 |
atgataacatattttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcactcattttttttttggtgcc |
26400174 |
T |
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| Q |
306 |
tttgccaaatacgaaaagtgtaaattcatttaacagtattaaggaatgatttatattttgatgttaaaataataagatattctttaagctcttttggtat |
405 |
Q |
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| T |
26400173 |
tttgccacatacgaaaagtgtaaatacattaaccagtattaagaaatgatttatattctgatgtcaaaatagtaagatattctttaagctcttatggtat |
26400074 |
T |
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| Q |
406 |
caaacttacttt |
417 |
Q |
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| T |
26400073 |
caaacttacttt |
26400062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 30271450 - 30271387
Alignment:
| Q |
218 |
tttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatcccc |
281 |
Q |
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| T |
30271450 |
tttcaaaatgggaaatacctataaatagctcctgagatggtacaaagtgagtcctggaatcccc |
30271387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 286
Target Start/End: Original strand, 31749164 - 31749198
Alignment:
| Q |
252 |
agatggtacaaagtgtgtcctggaatccccatcac |
286 |
Q |
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| T |
31749164 |
agatggtacaaagtgagtcctggaatccccatcac |
31749198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 42777498 - 42777413
Alignment:
| Q |
34 |
gaaatcatatttgaaattggttaacatgtccttatgcataagttgaaatacaaatatgaatggtatttttcatcatttgtaaatgc |
119 |
Q |
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| T |
42777498 |
gaaatcatgttccaaattggttaacatgtccttatgcatcagttacaatctagataggaatagtattgatcgtcatttgtaaatgc |
42777413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 42777117 - 42777041
Alignment:
| Q |
210 |
taacatattttcaaaatgggtaatacctataaatagttcttgagatggtacaaagtgtgtcctggaatccccatcac |
286 |
Q |
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| T |
42777117 |
taacataatttcaaatgggaaaatacctgtaaatggttattgagatggtacatagtgagtcctggagtcaccatcac |
42777041 |
T |
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