View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14897_high_3 (Length: 452)

Name: NF14897_high_3
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14897_high_3
NF14897_high_3
[»] chr3 (4 HSPs)
chr3 (172-447)||(38143516-38143790)
chr3 (17-175)||(38143316-38143474)
chr3 (118-169)||(17357193-17357244)
chr3 (172-258)||(35558740-35558826)
[»] scaffold0648 (1 HSPs)
scaffold0648 (172-255)||(1098-1180)
[»] scaffold0271 (1 HSPs)
scaffold0271 (172-255)||(15478-15560)
[»] chr7 (1 HSPs)
chr7 (172-252)||(23549402-23549482)
[»] chr5 (1 HSPs)
chr5 (172-256)||(35567727-35567813)
[»] chr6 (2 HSPs)
chr6 (172-254)||(23629126-23629210)
chr6 (116-152)||(2621009-2621045)
[»] chr4 (3 HSPs)
chr4 (172-256)||(35798367-35798452)
chr4 (115-158)||(47568498-47568541)
chr4 (172-237)||(34274144-34274209)
[»] chr1 (6 HSPs)
chr1 (172-259)||(10596295-10596382)
chr1 (172-255)||(36801877-36801960)
chr1 (172-237)||(21631353-21631416)
chr1 (120-157)||(25081274-25081311)
chr1 (100-175)||(36802000-36802074)
chr1 (197-247)||(14876229-14876279)
[»] chr2 (2 HSPs)
chr2 (172-250)||(26754268-26754346)
chr2 (172-255)||(16556392-16556474)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 172 - 447
Target Start/End: Original strand, 38143516 - 38143790
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctctatcttcgactataag 271  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  38143516 aaataatttttctttaaatttattacatttgtatgtgtgaccaaataaatttgatttagatttgtgaccatataagaattgctctatcttcgactataaa 38143615  T
Q  272 atccactttttctaatttgttgtccttgatataaaatcatcttcaaactttcacaagcattcacaaaaatacccataataaatttatattgggagacaca 371  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38143616 atccactttttctaatttgttgtc-ttgatataaaatcatcttcaaactttcataagcattcacaaaaatacccataataaatttatattgggagacaca 38143714  T
Q  372 aatttgttatctcataaaaatacccataaaaacttgtaggggtcttgtaaaacaaaatggagctagctagtataat 447  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38143715 aatttgttatctcataaaaatacccataaaaatttgtaggggtcttgtaaaacaaaatggagctagctagtataat 38143790  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 38143316 - 38143474
Alignment:
Q  17 agaaatagactcctattggcagcggccctgaaattcatcaatttgtagaaggattatcaatgaagagaaaaagattttcattactccctctatcttcagg 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38143316 agaaatagactcctattggcagcggcgctgaaattcatcaatttgtagaaggattatcaatgaagagaaaaagattttcattactccctctatcttcagg 38143415  T
Q  117 agaaattctaacttgaacacaaccctaaattaattttatttgggcatacattcacaaat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38143416 agaaattctaacttgaacacaaccctaaattaattttatttgggcatacattcacaaat 38143474  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 17357193 - 17357244
Alignment:
Q  118 gaaattctaacttgaacacaaccctaaattaattttatttgggcatacattc 169  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  17357193 gaaattctaacttgaacacaaccccaaattaatttcatttgggcacacattc 17357244  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 35558740 - 35558826
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctctat 258  Q
    ||||||||||||||| ||||| ||| ||||||||||| |   ||||||||||||||| | |||||| ||| | ||||||||||||||    
T  35558740 aaataatttttcttttaattttttacatttgtgtgtgcgtgtaaataaatttgatttgggtttgtgcccacgtaagaattgctctat 35558826  T

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Target: scaffold0648 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 1098 - 1180
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctc 255  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| | ||||||| |||| |||||||||||    
T  1098 aaataatttttctttaaatttattatattagtgtgtgtgaggaaataaatttgatttgggtttgtga-catgtaagaattgctc 1180  T

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Target: scaffold0271 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 15478 - 15560
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctc 255  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| | ||||||| |||| |||||||||||    
T  15478 aaataatttttctttaaatttattatattagtgtgtgtgaggaaataaatttgatttgggtttgtga-catgtaagaattgctc 15560  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 23549402 - 23549482
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattg 252  Q
    ||||||||||||||| ||||| | ||||||||||||||| |||||| |||||||||| | |||||| ||||| ||||||||    
T  23549402 aaataatttttcttttaatttttgatatttgtgtgtgtgcccaaatcaatttgatttgggtttgtgcccatgtaagaattg 23549482  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 35567813 - 35567727
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgt--gtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctct 256  Q
    |||||||||||||||||||||  || ||||||||  ||||||||||||||||||||||| | |||||| | ||| ||||||||||||    
T  35567813 aaataatttttctttaaattttatacatttgtgtatgtgtgaccaaataaatttgatttgggtttgtgcctatgtaagaattgctct 35567727  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 23629210 - 23629126
Alignment:
Q  172 aaataatttttctttaaatttattatatt--tgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgct 254  Q
    ||||||||||||||||||||| |||||||  ||| ||||||||||||||||||| |||| | |||||| | ||| ||||||||||    
T  23629210 aaataatttttctttaaattttttatatttatgtatgtgtgaccaaataaatttaatttgggtttgtgtctatgtaagaattgct 23629126  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 2621009 - 2621045
Alignment:
Q  116 gagaaattctaacttgaacacaaccctaaattaattt 152  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  2621009 gagaaattctaacttgaacacaatcctaaatgaattt 2621045  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Original strand, 35798367 - 35798452
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtg--tgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctct 256  Q
    ||||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||  ||||||   ||| ||||||||||||    
T  35798367 aaataattttt-tttaaattttttatatttgtgtgagtgtgaccaaataaatttgatttaagtttgtgcttatggaagaattgctct 35798452  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 47568541 - 47568498
Alignment:
Q  115 ggagaaattctaacttgaacacaaccctaaattaattttatttg 158  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  47568541 ggagaaattctaacttggacacaaccctaaattaattttatttg 47568498  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 34274209 - 34274144
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtg 237  Q
    ||||||||| | ||| ||||  |||| ||||||||||  |||||||||||||||||||||||||||    
T  34274209 aaataatttctttttgaattctttatttttgtgtgtgaaaccaaataaatttgatttagatttgtg 34274144  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 10596382 - 10596295
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctctatc 259  Q
    ||||||||| ||||| ||||| |||||||| ||||||||  ||| ||||||||||||   |||||| |||| ||||||||||||||||    
T  10596382 aaataatttctcttttaatttcttatatttatgtgtgtgttcaattaaatttgatttgagtttgtgtccatacaagaattgctctatc 10596295  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 36801960 - 36801877
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctc 255  Q
    ||||| ||| ||||||||||| ||| ||||||||||| | ||||||||||||||||| | |||||| ||||  |||||||||||    
T  36801960 aaatactttctctttaaattttttacatttgtgtgtgcgcccaaataaatttgatttgggtttgtgcccatctaagaattgctc 36801877  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 21631416 - 21631353
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtg 237  Q
    ||||||||||||||||||||| |||  ||||||||||  |||||||||||||||||| | ||||||    
T  21631416 aaataatttttctttaaattttttacgtttgtgtgtg--accaaataaatttgatttgggtttgtg 21631353  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 25081274 - 25081311
Alignment:
Q  120 aattctaacttgaacacaaccctaaattaattttattt 157  Q
    |||||||||||| |||||||||||||||||||||||||    
T  25081274 aattctaacttggacacaaccctaaattaattttattt 25081311  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 36802074 - 36802000
Alignment:
Q  100 ctccctctatcttcaggagaaattctaacttgaacacaaccctaaattaattttatttgggcatacattcacaaat 175  Q
    |||||||||| || ||||||||||||| ||||||||||| |  |||| || ||||||||| || ||||||||||||    
T  36802074 ctccctctatttt-aggagaaattctatcttgaacacaaactcaaatcaaatttatttggacacacattcacaaat 36802000  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 14876229 - 14876279
Alignment:
Q  197 tatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaag 247  Q
    ||||| |||||||||| |||||||||| ||||| ||||||||||| |||||    
T  14876229 tatttatgtgtgtgactaaataaattttatttaaatttgtgaccaagcaag 14876279  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 26754346 - 26754268
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaat 250  Q
    |||||| || ||||| ||||| |||||||| |||||||| |||||| ||||| |||||||||||||  || ||||||||    
T  26754346 aaataacttctcttttaattttttatatttatgtgtgtgtccaaatcaatttaatttagatttgtgctcaagcaagaat 26754268  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 16556474 - 16556392
Alignment:
Q  172 aaataatttttctttaaatttattatatttgtgtgtgtgaccaaataaatttgatttagatttgtgaccatgcaagaattgctc 255  Q
    ||||||||||||||||| ||| ||| | |||||||||||| ||||||||||| ||||   |||||| | ||| |||||||||||    
T  16556474 aaataatttttctttaatttt-ttacaattgtgtgtgtgaacaaataaatttaatttgtgtttgtgcctatgtaagaattgctc 16556392  T

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