View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14897_high_6 (Length: 219)
Name: NF14897_high_6
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14897_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 8420700 - 8420878
Alignment:
| Q |
19 |
actacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctagatttcatttctttattattctgattttgttcaagaaggacg |
118 |
Q |
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| T |
8420700 |
actacttcctatagttatagttatgctatgagtga----ctcaattaaaataaacctagttttcatttctttattattctgattttgttcaaaagggacg |
8420795 |
T |
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| Q |
119 |
gttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagactgagaacatttcctactctctgctgc |
208 |
Q |
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| T |
8420796 |
gttatttgtatatgtatctacctataataattt-------gataacacacaattaggaagagactgagaacatttcctactctctgctgc |
8420878 |
T |
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Target: chr7 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 49171361 - 49171237
Alignment:
| Q |
84 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
183 |
Q |
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| T |
49171361 |
tttctttattattctgattttgttcaagaaggacggttatttgtatatgtatctacctataataattttcttagggataacacacaattaggaagagact |
49171262 |
T |
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| Q |
184 |
gagaacatttcctactctctgctgc |
208 |
Q |
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| T |
49171261 |
gagaacatttcctactctctgctgc |
49171237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 49171603 - 49171545
Alignment:
| Q |
19 |
actacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
77 |
Q |
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| T |
49171603 |
actacttcctatagttatagttatgctacgagtgatcgactcaattaaaataaacctag |
49171545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 206
Target Start/End: Complemental strand, 21492460 - 21492315
Alignment:
| Q |
58 |
ctcaattaaaataaacctagatttcatttctttattattctga-ttttgttcaagaaggacggttatttgtatatgtatctacctataataattttctta |
156 |
Q |
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| T |
21492460 |
ctcaattaaaataaacttagttttcttttctttatttttctgatttttgttcaagaggggcggttttt----catatatctagctataataattttccta |
21492365 |
T |
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| Q |
157 |
gggataacacacaattaggaagagactgagaacatttcctactctctgct |
206 |
Q |
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| T |
21492364 |
gggataacatacaattaggaagagaccaataacgtttcctactatctgct |
21492315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 45232599 - 45232677
Alignment:
| Q |
61 |
aattaaaataaacctagatttcatttctttattatt-ctgattttgttcaagaaggacggttatttgtatatgtatcta |
138 |
Q |
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| T |
45232599 |
aattaaaacaaacatagttttcttttctttatttttgctgattttgttcaagagggacggttatatatatacgtatcta |
45232677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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