View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14897_high_7 (Length: 210)
Name: NF14897_high_7
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14897_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 46255214 - 46255400
Alignment:
| Q |
1 |
atgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggatgctacatcaaaaacaacaccat |
100 |
Q |
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| T |
46255214 |
atgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggctgctacatcaaaaacaacaccat |
46255313 |
T |
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| Q |
101 |
ttccatctgcagtgatagtaagacctttcaaagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaactga |
187 |
Q |
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| T |
46255314 |
ttccatctgcagtgatagtaagacctttcacagcctcaaccttctattcaggcaaaaacctcctcaagattttatatgcaaaactga |
46255400 |
T |
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Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 46245525 - 46245714
Alignment:
| Q |
1 |
atgtccaactatactctttacaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcggatgctacatcaaaaacaacaccat |
100 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
46245525 |
atgtctaactatactctttaaaagtgatgattcaagcgaaattctctaccagcaagatatgtatctaaatcttcagctgctacatcaaaaacaacaccat |
46245624 |
T |
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| Q |
101 |
ttccatctgcagtgatagtaagacctttcaaagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaactgacaa |
190 |
Q |
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| T |
46245625 |
ttccatctgcagtgatagtaagacctttcacagcctcaaccttctcttcaggcaaaaacctcctcaagattttatatgcaaaactgacaa |
46245714 |
T |
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