View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14897_low_2 (Length: 456)

Name: NF14897_low_2
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14897_low_2
NF14897_low_2
[»] chr4 (6 HSPs)
chr4 (66-440)||(44589421-44589796)
chr4 (124-203)||(43982081-43982159)
chr4 (8-54)||(44588971-44589017)
chr4 (116-187)||(38341164-38341235)
chr4 (120-203)||(9641223-9641308)
chr4 (120-202)||(9626531-9626615)
[»] chr7 (2 HSPs)
chr7 (129-204)||(3818764-3818839)
chr7 (123-203)||(33422586-33422665)
[»] chr8 (2 HSPs)
chr8 (134-170)||(16932989-16933025)
chr8 (123-188)||(27342947-27343014)
[»] chr1 (1 HSPs)
chr1 (120-203)||(4088185-4088268)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 66 - 440
Target Start/End: Original strand, 44589421 - 44589796
Alignment:
Q  66 agtaacaaatgctagaaattagttgttattcttaaaagaacnnnnnnntgtataaataaaaa-tatcagatgaatataatagtaatattagacttatgaa 164  Q
    ||||| |||||||||||||||||| ||||| ||||||||||       | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44589421 agtaataaatgctagaaattagttattattgttaaaagaacaaaaat-tatataaataaaaaatatcagatgaatataatagtaatattagacttatgaa 44589519  T
Q  165 ggaaaacatgaatagtaacaatagcagtaattagggatgaannnnnnnnncttctataggcatccttnnnnnnnn-gtataggcatgatatttatgttta 263  Q
    |||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||         ||||||||||||||||||||||||    
T  44589520 ggaaaacaagaatagtaacaatagcagtaattagggatgatttttttttctttctataggcatccttaaaaaaaaagtataggcatgatatttatgttta 44589619  T
Q  264 taacacattctcaactaactacactgttacttgtaacacaaataacctcactaactatatctaataggtaacactcttctttatttttgtatggagtacc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44589620 taacacattctcaactaactacactgttacttgtaacacaaataacctcactaactatatctaataggtaacactcttctttatttttgtatggagtacc 44589719  T
Q  364 tttgatgcttggattaaccaatggcaaattaattcatccaatctttatgtgataacccaacaaatcaaagcaaatcc 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44589720 tttgatgcttggattaaccaatggcaaattaattcatccaatctttatgtgataacccaacaaatcaaagcaaatcc 44589796  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 43982159 - 43982081
Alignment:
Q  124 aaaatatcagatgaatataatagtaatattagacttatgaaggaaaacatgaatagtaacaatagcagtaattagggatg 203  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||  |||| ||||||| ||||    
T  43982159 aaaatatcaaatgaatataatagtaataatagacttatgaaggaaaaaat-aatagtaacagcagcactaattagagatg 43982081  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 44588971 - 44589017
Alignment:
Q  8 cgaagaatatgcaatgaaatgcacctgggttttatctttagaataaa 54  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  44588971 cgaaaaatatgcaatgaaatgcacctgggttttatctttagaataaa 44589017  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 38341164 - 38341235
Alignment:
Q  116 tataaataaaaatatcagatgaatataatagtaatattagacttatg-aaggaaaacatgaatagtaacaata 187  Q
    |||||||||||| |||| || |||| |||||||||| |||||||||| ||||||||||| |||||||||||||    
T  38341164 tataaataaaaagatcaaattaatagaatagtaataatagacttatgaaaggaaaacat-aatagtaacaata 38341235  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 9641223 - 9641308
Alignment:
Q  120 aataaaaatatcagatgaatataatagtaatattagacttatgaagg--aaaacatgaatagtaacaatagcagtaattagggatg 203  Q
    |||||||| | || |||||||||||| ||||  ||||||||||||||  |||| |  |||||||| ||||||| ||||||||||||    
T  9641223 aataaaaagaacaaatgaatataatattaattatagacttatgaagggaaaaaaaataatagtaataatagcattaattagggatg 9641308  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 9626531 - 9626615
Alignment:
Q  120 aataaaaatatcagatgaatataatagtaatattagacttatgaagg--aaaacatgaatagtaacaatagcagtaattagggat 202  Q
    |||||||| | || |||||||||||| ||||| ||||||||||||||  |||| |  |||||||| | | |||||||||||||||    
T  9626531 aataaaaaaaacaaatgaatataatattaataatagacttatgaagggaaaaaaaataatagtaatagtggcagtaattagggat 9626615  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 3818764 - 3818839
Alignment:
Q  129 atcagatgaatataatagtaatattagacttatgaaggaaaacatgaatagtaacaatagcagtaattagggatga 204  Q
    |||| |||| |||||||||| || ||||||||||||| ||||||  |||||||| | |||||||||||||||||||    
T  3818764 atcaaatgattataatagtactaatagacttatgaagaaaaacaataatagtaatagtagcagtaattagggatga 3818839  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 33422586 - 33422665
Alignment:
Q  123 aaaaatatcagatgaatataatagtaatattagacttatgaaggaaaacatgaatagtaacaatagcagtaattagggatg 203  Q
    ||||| |||| |||||||||||| ||||| ||||||||||||||  || |  |||||||| | ||||||||| ||||||||    
T  33422586 aaaaaaatcaaatgaatataata-taatagtagacttatgaaggggaaaaataatagtaatagtagcagtaaatagggatg 33422665  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 16932989 - 16933025
Alignment:
Q  134 atgaatataatagtaatattagacttatgaaggaaaa 170  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  16932989 atgaatataacagtaataatagacttatgaaggaaaa 16933025  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 27342947 - 27343014
Alignment:
Q  123 aaaaatatcagatgaatataata--gtaatattagacttatgaaggaaaacatgaatagtaacaatag 188  Q
    |||||||||| |||| |||||||  |||||| | ||||||||||| ||||||  ||||||||||||||    
T  27342947 aaaaatatcaaatgagtataatatagtaatagtcgacttatgaagaaaaacaataatagtaacaatag 27343014  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 4088185 - 4088268
Alignment:
Q  120 aataaaaatatcagatgaatataatagtaatattagacttatgaag-gaaaacatgaatagtaacaatagcagtaattagggatg 203  Q
    |||||||| |||| || ||||||||||||| | ||||||||||||| ||||| || |||||||| | ||  ||||||||||||||    
T  4088185 aataaaaagatcaaataaatataatagtaacagtagacttatgaagagaaaaaat-aatagtaatagtaagagtaattagggatg 4088268  T

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