View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14897_low_4 (Length: 447)
Name: NF14897_low_4
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14897_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 16941788 - 16941359
Alignment:
| Q |
1 |
catgttcatttcaatactttnnnnnnngtattggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaa |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941788 |
catgttcatttcaatactttaaaaaaagtattggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaa |
16941689 |
T |
|
| Q |
101 |
agcctttgaacttttgtcgttttaaatcatataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatga |
200 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941688 |
agcctttaaacttttgtcgttttagatcatataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatga |
16941589 |
T |
|
| Q |
201 |
aattctattttgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941588 |
aattctattttgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatt |
16941489 |
T |
|
| Q |
301 |
tggaacgaaagccagagccagaagatttgtctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16941488 |
tggaacgaaagccagagccagaagatttatctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaa |
16941389 |
T |
|
| Q |
401 |
atctttcataaaattaccagcagatgcata |
430 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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| T |
16941388 |
atctttcataaaattaccagccgatgcata |
16941359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 17012453 - 17012024
Alignment:
| Q |
1 |
catgttcatttcaatactttnnnnnnngtattggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17012453 |
catgttcatttcaatactttaaaaaaagtattggcaaagggaaaaattattattgaagtgacattaatgaccattttacgatattgctcttgatcgagaa |
17012354 |
T |
|
| Q |
101 |
agcctttgaacttttgtcgttttaaatcatataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatga |
200 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17012353 |
agcctttaaacttttgtcgttttagatcatataaactcaaacttttacaatagggctctatacatctcatgagattaaaaacaatatttcattaaaatga |
17012254 |
T |
|
| Q |
201 |
aattctattttgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17012253 |
aattctattttgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatt |
17012154 |
T |
|
| Q |
301 |
tggaacgaaagccagagccagaagatttgtctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17012153 |
tggaacgaaagccagagccagaagatttatctaaggtcaggctgagactctgcccattttcaaggactttggcacgactctcaccccatgttatttcaaa |
17012054 |
T |
|
| Q |
401 |
atctttcataaaattaccagcagatgcata |
430 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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|
| T |
17012053 |
atctttcataaaattaccagccgatgcata |
17012024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 52590574 - 52590456
Alignment:
| Q |
213 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
312 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| | ||||| || ||||||||||||||||| |||||||||||||||| |||||||||||| | |
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| T |
52590574 |
cttacataatatgttgtgactgtgccagcagagttaccgggcacaagctttagttgcatgtcaatttttccaaacaagtactcatttttggaacgaaatc |
52590475 |
T |
|
| Q |
313 |
cagagccagaagatttgtc |
331 |
Q |
| |
|
|||||||||| | |||||| |
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|
| T |
52590474 |
cagagccagatgctttgtc |
52590456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 53492512 - 53492403
Alignment:
| Q |
213 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
312 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |||| |||||||| |||||||| |||||||| ||||| | ||| |||| |||||| |||||| |
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| T |
53492512 |
cttacataataggcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagc |
53492413 |
T |
|
| Q |
313 |
cagagccaga |
322 |
Q |
| |
|
| || ||||| |
|
|
| T |
53492412 |
ctgaaccaga |
53492403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 53501949 - 53501876
Alignment:
| Q |
213 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaa |
286 |
Q |
| |
|
||||| ||||| || |||||| ||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
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|
| T |
53501949 |
cttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaatcttcccaaa |
53501876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 53498826 - 53498708
Alignment:
| Q |
213 |
cttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagc |
312 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| || | ||||| || | ||||| |||||||| ||||| ||||| |||| |||||| |||||| |
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|
| T |
53498826 |
cttacataataggcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagc |
53498727 |
T |
|
| Q |
313 |
cagagccagaagatttgtc |
331 |
Q |
| |
|
| || ||||| | |||||| |
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|
| T |
53498726 |
ctgaaccagaggctttgtc |
53498708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 37188476 - 37188356
Alignment:
| Q |
211 |
tgcttacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaa |
310 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||| |||||||| || ||||| |||||||| ||||| | ||| |||| |||||| |||| |
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|
| T |
37188476 |
tgcttacataataggcagtgacggtgccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaa |
37188377 |
T |
|
| Q |
311 |
gccagagccagaagatttgtc |
331 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
37188376 |
accagagccagaggatttgtc |
37188356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 40031102 - 40031176
Alignment:
| Q |
215 |
tacataataggctgtgacaatgccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaa |
289 |
Q |
| |
|
||||||||| || ||||||||||| |||||||| || | |||||||||| ||||||||||| | | |||||||| |
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|
| T |
40031102 |
tacataatatgcagtgacaatgcctgcagagttccctggcacaagtttgatttgcatgtcaaatctaccaaacaa |
40031176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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