View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14897_low_5 (Length: 290)
Name: NF14897_low_5
Description: NF14897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14897_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 234646 - 234395
Alignment:
| Q |
20 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
234646 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
234547 |
T |
|
| Q |
120 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatannnnnnnccatgaagtttttaaaattgattgatttttacaaac |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
234546 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatatttttttccatgaagtttttaaaattgattgatttttacaaac |
234447 |
T |
|
| Q |
220 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
234446 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattg |
234395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 36418960 - 36419173
Alignment:
| Q |
20 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |
|
|
| T |
36418960 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacgctggtgtgcgacattttatccaaatcaccatag |
36419059 |
T |
|
| Q |
120 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataa---atannnnnnnccatgaagtttttaaaattgattgatttttaca |
216 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||| |
|
|
| T |
36419060 |
atttcgacaagtcttgcatttattcattctgagttcagctaaaggttttaaaaagatttttttttttcaatgaagtttttagaattgattgatttttaca |
36419159 |
T |
|
| Q |
217 |
aacacctatgactt |
230 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36419160 |
aacacctatgactt |
36419173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University