View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14898_low_3 (Length: 381)
Name: NF14898_low_3
Description: NF14898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14898_low_3 |
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| [»] scaffold0110 (4 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 11733 - 12098
Alignment:
| Q |
1 |
tgtcctataaaaccaaactcacacatgtgataatcaatgaaaaattatctcccataacagttacacatacaaatagtgtcagtgtttcacttcactattg |
100 |
Q |
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| T |
11733 |
tgtcctataaaaccaaactcacacatgtgataatcaatgaaaaattatctcccataacacttacacatacaaatagtgtcagtgtttcacttcactattg |
11832 |
T |
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| Q |
101 |
ttgaagatggtgatgttggattcacaacagcatcaatgtttttattccatgtttttcttcttcttaattgttcttgttagctcagttaatggggttacgg |
200 |
Q |
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| T |
11833 |
ttgaagatggtgatgttggattcacaacagcatcaatgtttttattccatgtttttcttcttcttaattgttcttgttagctcagttaagggggttacag |
11932 |
T |
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| Q |
201 |
tgcctgaaacagtgcattttgatactggagggttgagtagagatgtttttcctaaaggttttgtgtttggagttgcaacttctgcttatcaagttgaggg |
300 |
Q |
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| T |
11933 |
tgcctgaaacagtgcatttggatactggagggttgagtagagatgtttttcctaaggggtttgtgtttggagttgcaacttctgcttatcaagtagaggg |
12032 |
T |
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| Q |
301 |
tatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtg |
366 |
Q |
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| T |
12033 |
tatagctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtg |
12098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 19470 - 19835
Alignment:
| Q |
1 |
tgtcctataaaaccaaactcacacatgtgataatcaatgaaaaattatctcccataacagttacacatacaaatagtgtcagtgtttcacttcactattg |
100 |
Q |
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| T |
19470 |
tgtcctataaaaccaaactcacacatgtgataatcaatgaaaaattatctcccataacacttacacatacaaatagtgtcagtgtttcacttcactattg |
19569 |
T |
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| Q |
101 |
ttgaagatggtgatgttggattcacaacagcatcaatgtttttattccatgtttttcttcttcttaattgttcttgttagctcagttaatggggttacgg |
200 |
Q |
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| T |
19570 |
ttgaagatggtgatgttggattcacaacagcatcaatgtttttattccatgtttttcttcttcttaattgttcttgttagctcagttaagggggttacag |
19669 |
T |
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| Q |
201 |
tgcctgaaacagtgcattttgatactggagggttgagtagagatgtttttcctaaaggttttgtgtttggagttgcaacttctgcttatcaagttgaggg |
300 |
Q |
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| T |
19670 |
tgcctgaaacagtgcatttggatactggagggttgagtagagatgtttttcctaaggggtttgtgtttggagttgcaacttctgcttatcaagtagaggg |
19769 |
T |
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| Q |
301 |
tatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtg |
366 |
Q |
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| T |
19770 |
tatagctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtg |
19835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 101 - 366
Target Start/End: Original strand, 27269 - 27534
Alignment:
| Q |
101 |
ttgaagatggtgatgttggattcacaacagcatcaatgtttttattccatgtttttcttcttcttaattgttcttgttagctcagttaatggggttacgg |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| | |
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| T |
27269 |
ttgaagatgatgatgttggattcacaacagcatcaatgtttctattccatgtttttcttcttcttagttgttcttgttagttcagttaatggagttacag |
27368 |
T |
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| Q |
201 |
tgcctgaaacagtgcattttgatactggagggttgagtagagatgtttttcctaaaggttttgtgtttggagttgcaacttctgcttatcaagttgaggg |
300 |
Q |
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| T |
27369 |
tgcctgaaacagtgcatttggatactggagggttgagtagagatgtttttcctaaggggtttgtgtttggagttgcaacttctgcttatcaagtagaggg |
27468 |
T |
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| Q |
301 |
tatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacctggtctgtg |
366 |
Q |
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| T |
27469 |
tatggctagcaaagagggtcgtggccctagtatttgggatgttttcatcaaaaaacccggtttgtg |
27534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27184 - 27233
Alignment:
| Q |
1 |
tgtcctataaaaccaaactcacacatgtgataatcaatgaaaaattatct |
50 |
Q |
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| T |
27184 |
tgtcctataaaaccaaactcactcatgtggtaatcaatgaaacattatct |
27233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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