View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14898_low_4 (Length: 364)
Name: NF14898_low_4
Description: NF14898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14898_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 32110734 - 32110388
Alignment:
| Q |
14 |
attatttggtgaaagttgtgaattgtgactgcacgtttggtttgaattggaaaaacaaacaaggatgagtgaaagcacaaaatcaaaagatacctttgaa |
113 |
Q |
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| T |
32110734 |
attatttggtgaaagttgtgaattgtgaatgcacgtttggtttgaattggaaaaacgaacaaggatgagtgaaaacacaaaatcaaaagatacctttgaa |
32110635 |
T |
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| Q |
114 |
gttttgattcaattatttggctggttaacataatcactctgaatttgaatcaaagtgnnnnnnnnnnncttccttattctcctaacagcaaacgctagca |
213 |
Q |
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| T |
32110634 |
gttttgattcaattatttggctggttaacataatcactctgaatttgaatcaaagtgtttttttttttcttccttattctcctaacagcaaacgctagca |
32110535 |
T |
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| Q |
214 |
caagcctactcaaatgctcaaaaccaatctgaacatcaattttctgtatcagtagtgcctaccactacctcattgacacaagttccagcaataacattca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32110534 |
caagcctactcaaatgctcaaaaccaatctgaacatcaattttctgtatcagtagtgcctaccactacctcattgacacaagttcctgcaataacattca |
32110435 |
T |
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| Q |
314 |
acaacattgcacaacaactgataccgaactctgttgagtattcttct |
360 |
Q |
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| T |
32110434 |
acaacattgcacaacaactgataccgaactctgttgagtattcttct |
32110388 |
T |
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