View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14898_low_6 (Length: 236)
Name: NF14898_low_6
Description: NF14898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14898_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 40888428 - 40888629
Alignment:
| Q |
20 |
ggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40888428 |
ggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgc |
40888527 |
T |
|
| Q |
120 |
tggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatgtctgagaacnnnnnnnnnaaccacaagaattgtgggtaatttgtatctg |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40888528 |
tggtatttactatttaatgatgcttcagtggctgctttcctacaagaaatgtctgagaactttttttttaaccacaagaattgtgggtaatttgtatctg |
40888627 |
T |
|
| Q |
220 |
tg |
221 |
Q |
| |
|
|| |
|
|
| T |
40888628 |
tg |
40888629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 44139658 - 44139859
Alignment:
| Q |
20 |
ggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44139658 |
ggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgctagatatattttcaagtgttgattcttatcttatgc |
44139757 |
T |
|
| Q |
120 |
tggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatgtctgagaacnnnnnnnnnaaccacaagaattgtgggtaatttgtatctg |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44139758 |
tggtatttactatttattgatgcttcagtggctgctttcctacaagaaatgtctgagaactttttttttaaccacaagaattgtgggtaatttgtatctg |
44139857 |
T |
|
| Q |
220 |
tg |
221 |
Q |
| |
|
|| |
|
|
| T |
44139858 |
tg |
44139859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University