View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_high_1 (Length: 416)
Name: NF14899_high_1
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_high_1 |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 22 - 402
Target Start/End: Complemental strand, 5862 - 5482
Alignment:
| Q |
22 |
aataataactataaataaacaagcatgtataaaattgtatttaagcttttgagataaaatgtctataatattgaaagcttcactccactatatctctcac |
121 |
Q |
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| T |
5862 |
aataataactataaataaacaagcatgtataaaattgtatttaagcttttgagataaaatgtgtataatattgaaagcttcactccactatatctctcac |
5763 |
T |
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| Q |
122 |
ataattactattgtgttgtgtcttgtgnnnnnnnactactaaattcatagaatatatattttaaagagagattttagcaatttttcattgttnnnnnnnc |
221 |
Q |
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| T |
5762 |
ataattactattgtgttgtgtcttgtgtttttttactactaaattcagagaatatatattttaaagagagattttagcaatttttcattgttaaaaaaac |
5663 |
T |
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| Q |
222 |
cagtgttaaaaatatactattaaccacctactaaatgttattaatcacatataaactgtattaaacatgtagtaagagttttttctacattacctcttaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662 |
cagtgttaaaaatatactattaaccacctactaaatgttattaatcccatataaactgtattaaacatgtagtaagagttttttctacattacctcttaa |
5563 |
T |
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| Q |
322 |
cgaattgaaggtaatttacccatatcaaataaaaataacnnnnnnnncatctttatccttacaatcagttacaattttcat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
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| T |
5562 |
cgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaattttcat |
5482 |
T |
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