View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_high_2 (Length: 387)
Name: NF14899_high_2
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 43987138 - 43986778
Alignment:
| Q |
19 |
ataaccttaccttacactatccaaattcaactcaactcaaaacaaaacaactatagtatagtgtattattatgaatttgtttgtttcaattaaataatga |
118 |
Q |
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| T |
43987138 |
ataaccttaccttacactatccaagttcaactcaactcaaaacaaaacaactatagtgtattattatattatgaatttgtttgtttcaattcaataatga |
43987039 |
T |
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| Q |
119 |
ctagttctcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacatatctcccacaacactcatcacttctct |
218 |
Q |
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| T |
43987038 |
ctagtactcatcttactaatcaaagggatcgccgtatcctatcattcccggcggttcacccttgcgaaaacatatctcccacaacactcatcacttctct |
43986939 |
T |
|
| Q |
219 |
aatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaactatacgtcaaattactataatttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986938 |
aatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacacaaaaacgtaacgcaagagaaactatacgtcaaattactataatttca |
43986839 |
T |
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| Q |
319 |
attttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986838 |
attttcctcaacgaaattaaagaccatggttccattattcctaactcaattatcctatgct |
43986778 |
T |
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