View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14899_high_4 (Length: 358)

Name: NF14899_high_4
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14899_high_4
NF14899_high_4
[»] chr3 (9 HSPs)
chr3 (16-342)||(5374815-5375141)
chr3 (127-342)||(5363045-5363260)
chr3 (127-342)||(5368261-5368476)
chr3 (115-343)||(5369072-5369306)
chr3 (114-343)||(5356399-5356631)
chr3 (47-87)||(5363276-5363316)
chr3 (47-84)||(5368495-5368532)
chr3 (136-197)||(7126688-7126749)
chr3 (128-204)||(7178718-7178794)
[»] chr6 (2 HSPs)
chr6 (136-203)||(33839541-33839608)
chr6 (136-196)||(33843461-33843521)
[»] chr8 (1 HSPs)
chr8 (132-221)||(30054498-30054587)
[»] chr7 (1 HSPs)
chr7 (136-201)||(44500709-44500774)
[»] chr4 (1 HSPs)
chr4 (136-197)||(36590659-36590720)
[»] scaffold0210 (1 HSPs)
scaffold0210 (136-196)||(15608-15668)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 5375141 - 5374815
Alignment:
Q  16 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5375141 caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacgaaaaatacaagcaattgaagaacaaaat 5375042  T
Q  116 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375041 ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc 5374942  T
Q  216 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  5374941 ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagca 5374842  T
Q  316 aagttagaaagacacggagcagataac 342  Q
    ||  |||||||| ||||||||||||||    
T  5374841 aatgtagaaagatacggagcagataac 5374815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 342
Target Start/End: Complemental strand, 5363260 - 5363045
Alignment:
Q  127 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5363260 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaatcctcttcgaccc 5363161  T
Q  227 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 326  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5363160 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5363061  T
Q  327 acacggagcagataac 342  Q
    | ||||||||||||||    
T  5363060 atacggagcagataac 5363045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 342
Target Start/End: Complemental strand, 5368476 - 5368261
Alignment:
Q  127 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5368476 ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaatcctcttcgaccc 5368377  T
Q  227 atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag 326  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||    
T  5368376 agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag 5368277  T
Q  327 acacggagcagataac 342  Q
    | ||||||||||||||    
T  5368276 atacggagcagataac 5368261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 115 - 343
Target Start/End: Complemental strand, 5369306 - 5369072
Alignment:
Q  115 tataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctg---aatagggttgcag 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||   | ||||  |||||    
T  5369306 tataaatataacggcctcaaaacctgaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctgatcagtaggactgcag 5369207  T
Q  212 aatcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagt 308  Q
    ||||||||| |||  | |   ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||    
T  5369206 aatcctctttgacgaagccgatgatgtcttctgcatgaatgcataagtgtgtaatagaacaaggatggctcacacataattttagatctggagtaccagt 5369107  T
Q  309 aaaagcaaagttagaaagacacggagcagataact 343  Q
    |||||||||  ||||||| | ||||| ||||||||    
T  5369106 aaaagcaaacatagaaagtctcggagtagataact 5369072  T

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Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 343
Target Start/End: Complemental strand, 5356631 - 5356399
Alignment:
Q  114 atataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaa 213  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||  |||||||    
T  5356631 atataaatatagcagcctcaaaacctgaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaa 5356532  T
Q  214 tcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaa 310  Q
    ||||||| |||  | |    |||||||||| ||| ||  |||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||    
T  5356531 tcctctttgacgaagccgacgatgtcttctgcattaacatataagtgtgtaatagaacaaggatggctcacacttagtattagatttggagtaccagtaa 5356432  T
Q  311 aagcaaagttagaaagacacggagcagataact 343  Q
    ||| |||||||| ||||| ||||| | ||||||    
T  5356431 aagaaaagttagtaagactcggagtaaataact 5356399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5363316 - 5363276
Alignment:
Q  47 atagttatatattttagacaaaatttatatataaagaaacg 87  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  5363316 atagttatacattttagacaaaatttatatataaagaaacg 5363276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 5368532 - 5368495
Alignment:
Q  47 atagttatatattttagacaaaatttatatataaagaa 84  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  5368532 atagttatacattttagaccaaatttatatataaagaa 5368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 7126749 - 7126688
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 197  Q
    |||||||||||||| |||||||| || |||| |||| ||| |||||||||| ||| ||||||    
T  7126749 acctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagct 7126688  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 7178794 - 7178718
Alignment:
Q  128 gcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagg 204  Q
    |||| ||||||||||||||| || ||||||  || |||||| |||||||||||| ||| || |||||| ||| ||||    
T  7178794 gccttaaaacctgaagagtactataagagatcgtcaatgatgtgatattagcaaactcgagaagccagttgagtagg 7178718  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 33839541 - 33839608
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag 203  Q
    |||||||||||| | |||||||||||||||||||  || |||||||| ||||||||||||||||||||    
T  33839541 acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag 33839608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 33843461 - 33843521
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 196  Q
    ||||||||||| || |||| ||||||||||||||  |  |||||||| |||||||||||||    
T  33843461 acctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagc 33843521  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 30054498 - 30054587
Alignment:
Q  132 caaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttc 221  Q
    ||||||||||||||||| ||||||||| || |||||||||||||||| || || ||| |||||| ||| ||||  |||||| || |||||    
T  30054498 caaaacctgaagagtatcagaagagacagtcaatgatttgatattagaaaactgtagtagccagttgagtaggactgcagattcgtcttc 30054587  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 44500709 - 44500774
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaat 201  Q
    |||||||||||| | | |||||| || |||||||| || |||||||||||||| ||||||||||||    
T  44500709 acctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat 44500774  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 36590659 - 36590720
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct 197  Q
    |||||||||||| | | |||||| || |||||||||||||||||||| |||| |||||||||    
T  36590659 acctgaagagtactcgcagagaccgtcaatgatttgatattagcaagttctaacagccagct 36590720  T

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Target: scaffold0210 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 15608 - 15668
Alignment:
Q  136 acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc 196  Q
    |||||||||||| | |||| |||||| ||||||||||||||||  ||||| | ||||||||    
T  15608 acctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagc 15668  T

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