View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_high_9 (Length: 209)
Name: NF14899_high_9
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 28596405 - 28596229
Alignment:
| Q |
18 |
gatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctccc |
117 |
Q |
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| T |
28596405 |
gatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctccc |
28596306 |
T |
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| Q |
118 |
atctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaatctgt |
194 |
Q |
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| T |
28596305 |
atctttatcatagcagcggcaaagtcagacttaaaagttgtaggatttttgctgtattcagaaacgatagaatctgt |
28596229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 32494625 - 32494449
Alignment:
| Q |
18 |
gatgcatgctgatgaagaaagaattttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctccc |
117 |
Q |
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||||||| |||||||||||| || |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32494625 |
gatgcattctgatgaagaaaaaaatttgcaaaatcaattgatagcactgcatatacttcttatgattccagcagatccggttaagggttggatatctccc |
32494526 |
T |
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| Q |
118 |
atctttatcatagcagcggcaaagtcagacttaaaagttgtaggattgttgctgtattcagaaacgatagaatctgt |
194 |
Q |
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| T |
32494525 |
atctttatcatagcagcagcaaagtctgacttaaaagtagtaggatttttgctgtattcagaaacgatagaatctgt |
32494449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 28591603 - 28591747
Alignment:
| Q |
50 |
attaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagtcagactt |
149 |
Q |
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|||| |||| ||||||||| || |||||||| || ||||| || || || ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
28591603 |
attagttgacagcactgcagatgcttcttatgataccagccgacccagtcaagggttcaatatctcccatctttatcatagcagctgcaaagtcagactt |
28591702 |
T |
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| Q |
150 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgt |
194 |
Q |
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| T |
28591703 |
aaaagttgtaggattgttgctgtattcagaaacgatagaatctgt |
28591747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 28586508 - 28586647
Alignment:
| Q |
43 |
ttgtaaaattaattgatagcactgcatatacttcttataattccagcagatccggttaagggttggatatctcccatctttatcatagcagcggcaaagt |
142 |
Q |
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||||| ||||| |||| ||||||||||| |||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
28586508 |
ttgtataattagttgactgcactgcatatgcttcttatgactccagccgatccggttaagggttcaatatctcccatctttatcatagcagttgcaaagt |
28586607 |
T |
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| Q |
143 |
cagacttaaaagttgtaggattgttgctgtattcagaaac |
182 |
Q |
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| || || |||||||||||||||||||||||||| ||||| |
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| T |
28586608 |
cggatttgaaagttgtaggattgttgctgtattctgaaac |
28586647 |
T |
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