View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_low_3 (Length: 376)
Name: NF14899_low_3
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 6721108 - 6721454
Alignment:
| Q |
18 |
ttaataaacaacccgattatgttttctcatcggagattatgatcatataagaaagagatgtacttagtaacttctatcatttttacataccaatatatca |
117 |
Q |
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| T |
6721108 |
ttaataaacaacccgattatgttttctcatcggagattatgatcatataagaaagagatgtacttagtaacttctatcatttttacataccaatatatca |
6721207 |
T |
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| Q |
118 |
ttatgctgcaaaaaatgtaggaaattttcctattttctacgtaaagttttcatttttatggtcattttacaccaaactacatcgtcattcaaacaaattt |
217 |
Q |
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| T |
6721208 |
ttatgctgcaaaaaatgtagggaattttcctattttctacgtaaagttttcatttttatggtcattttacaccaaactacatcatcattcaaacaaattt |
6721307 |
T |
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| Q |
218 |
agcagtgtnnnnnnnnnnnnntggggaaattattaggttacaattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttctt |
317 |
Q |
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| T |
6721308 |
agcagtgtgaaaagaaaaaaatagggaaaatattaagttacaattgttgttttttggtttcctctattttgagttgaatgaaatatttaacatttttctt |
6721407 |
T |
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| Q |
318 |
gtatgcatcgtattgacataccttattatgttttctcaccacaggtt |
364 |
Q |
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| T |
6721408 |
atctgcatcgtattgacataccttattatgttttctcaccagaggtt |
6721454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 6716619 - 6716687
Alignment:
| Q |
267 |
ttttttggtttcctct--attttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattga |
333 |
Q |
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| T |
6716619 |
ttttttggtttcctctctattttgagttgagtgaaatatttaacatttttcatgtatgcaatgtattga |
6716687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 6715892 - 6715958
Alignment:
| Q |
69 |
aaagagatgtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaatgta |
136 |
Q |
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| T |
6715892 |
aaagggatgtgcttagtaatttctattatttttactt-ccaatatatcattatgctggaagaaatgta |
6715958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 6721754 - 6721791
Alignment:
| Q |
267 |
ttttttggtttcctctattttgagttgaatgaaatatt |
304 |
Q |
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| T |
6721754 |
ttttttggtttcctctttttttagttgaatgaaatatt |
6721791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 6721838 - 6721878
Alignment:
| Q |
21 |
ataaacaacccgattatgttttctcatcggagattatgatc |
61 |
Q |
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| T |
6721838 |
ataaacaaccctattatgttttctcatcaaagattatgatc |
6721878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 42230689 - 42230614
Alignment:
| Q |
258 |
caattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgac |
334 |
Q |
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| T |
42230689 |
caattgttattttttggtttcctttgttttgagttgaatg-aatatttaacatttttcatgtatgcatcgtattgac |
42230614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 42230440 - 42230325
Alignment:
| Q |
86 |
aacttctatcatttttacataccaatatatcattatgctgcaaaa-aatgtaggaaattttcctattttctacgtaaagttttcatttttatggtcattt |
184 |
Q |
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| T |
42230440 |
aacttctatcatttttatataccaatatatgattatgctgcaaaacaatgtagggaatatttctagtttgtacttaaatttttgtttttttggttcattt |
42230341 |
T |
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| Q |
185 |
tacaccaaactacatc |
200 |
Q |
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| T |
42230340 |
tacacccaaatacatc |
42230325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 42231130 - 42231075
Alignment:
| Q |
77 |
gtacttagtaacttctatcatttttacataccaatatatcattatgctgcaaaaaa |
132 |
Q |
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| T |
42231130 |
gtacttagaaacttctatcatttttacatacaaatatatgattatgctgcaaaaaa |
42231075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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