View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_low_4 (Length: 358)
Name: NF14899_low_4
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_low_4 |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 5375141 - 5374815
Alignment:
| Q |
16 |
caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacggaaaatacaagcaattgaagaacaaaat |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5375141 |
caaaggagagaacctatcgaaggaaagaaggatagttatatattttagacaaaatttatatataaagaaacgaaaaatacaagcaattgaagaacaaaat |
5375042 |
T |
|
| Q |
116 |
ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375041 |
ataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatc |
5374942 |
T |
|
| Q |
216 |
ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagca |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
5374941 |
ctcttcgacccatctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagca |
5374842 |
T |
|
| Q |
316 |
aagttagaaagacacggagcagataac |
342 |
Q |
| |
|
|| |||||||| |||||||||||||| |
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|
| T |
5374841 |
aatgtagaaagatacggagcagataac |
5374815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 342
Target Start/End: Complemental strand, 5363260 - 5363045
Alignment:
| Q |
127 |
ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc |
226 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
5363260 |
ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcaagcagccagctgagtagggttgcagaatcctcttcgaccc |
5363161 |
T |
|
| Q |
227 |
atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag |
326 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
5363160 |
agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag |
5363061 |
T |
|
| Q |
327 |
acacggagcagataac |
342 |
Q |
| |
|
| |||||||||||||| |
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| T |
5363060 |
atacggagcagataac |
5363045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 127 - 342
Target Start/End: Complemental strand, 5368476 - 5368261
Alignment:
| Q |
127 |
ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttcgaccc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
5368476 |
ggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctcgagcagccagctgagtagggttgcagaatcctcttcgaccc |
5368377 |
T |
|
| Q |
227 |
atctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaaaagcaaagttagaaag |
326 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
5368376 |
agctgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtgtttgattcggagtgccagtaaaagcaaatgtagaaag |
5368277 |
T |
|
| Q |
327 |
acacggagcagataac |
342 |
Q |
| |
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| |||||||||||||| |
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| T |
5368276 |
atacggagcagataac |
5368261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 115 - 343
Target Start/End: Complemental strand, 5369306 - 5369072
Alignment:
| Q |
115 |
tataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctg---aatagggttgcag |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | |||| ||||| |
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|
| T |
5369306 |
tataaatataacggcctcaaaacctgaagagtattagaagagactgtcaatgatttgatattagcaagctcttgcagccagctgatcagtaggactgcag |
5369207 |
T |
|
| Q |
212 |
aatcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagt |
308 |
Q |
| |
|
||||||||| ||| | | ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
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|
| T |
5369206 |
aatcctctttgacgaagccgatgatgtcttctgcatgaatgcataagtgtgtaatagaacaaggatggctcacacataattttagatctggagtaccagt |
5369107 |
T |
|
| Q |
309 |
aaaagcaaagttagaaagacacggagcagataact |
343 |
Q |
| |
|
||||||||| ||||||| | ||||| |||||||| |
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| T |
5369106 |
aaaagcaaacatagaaagtctcggagtagataact |
5369072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 114 - 343
Target Start/End: Complemental strand, 5356631 - 5356399
Alignment:
| Q |
114 |
atataaatatatcggcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaa |
213 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||| ||||||| |
|
|
| T |
5356631 |
atataaatatagcagcctcaaaacctgaagagtattagaagagactgtcaatgattttatattggcaagctctagcagccagctgagtaggactgcagaa |
5356532 |
T |
|
| Q |
214 |
tcctcttcgacccatc---tgatgtcttctacatcaatgtataagtgtgtaatagaacaaggatggctcacacatagtttttgattcggagtaccagtaa |
310 |
Q |
| |
|
||||||| ||| | | |||||||||| ||| || |||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| |
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| T |
5356531 |
tcctctttgacgaagccgacgatgtcttctgcattaacatataagtgtgtaatagaacaaggatggctcacacttagtattagatttggagtaccagtaa |
5356432 |
T |
|
| Q |
311 |
aagcaaagttagaaagacacggagcagataact |
343 |
Q |
| |
|
||| |||||||| ||||| ||||| | |||||| |
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|
| T |
5356431 |
aagaaaagttagtaagactcggagtaaataact |
5356399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 5363316 - 5363276
Alignment:
| Q |
47 |
atagttatatattttagacaaaatttatatataaagaaacg |
87 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5363316 |
atagttatacattttagacaaaatttatatataaagaaacg |
5363276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 5368532 - 5368495
Alignment:
| Q |
47 |
atagttatatattttagacaaaatttatatataaagaa |
84 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5368532 |
atagttatacattttagaccaaatttatatataaagaa |
5368495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 7126749 - 7126688
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct |
197 |
Q |
| |
|
|||||||||||||| |||||||| || |||| |||| ||| |||||||||| ||| |||||| |
|
|
| T |
7126749 |
acctgaagagtattcgaagagacggtcaatgttttggtatcagcaagctcttgcaaccagct |
7126688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 7178794 - 7178718
Alignment:
| Q |
128 |
gcctcaaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagg |
204 |
Q |
| |
|
|||| ||||||||||||||| || |||||| || |||||| |||||||||||| ||| || |||||| ||| |||| |
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|
| T |
7178794 |
gccttaaaacctgaagagtactataagagatcgtcaatgatgtgatattagcaaactcgagaagccagttgagtagg |
7178718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 33839541 - 33839608
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatag |
203 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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|
| T |
33839541 |
acctgaagagtacttgaagagactgttaatgattctatgttagcaaggtctagcagccagctgaatag |
33839608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 33843461 - 33843521
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc |
196 |
Q |
| |
|
||||||||||| || |||| |||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
33843461 |
acctgaagagtttttgaagtgactgttaatgattctaagttagcaaggtctagcagccagc |
33843521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 30054498 - 30054587
Alignment:
| Q |
132 |
caaaacctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaatagggttgcagaatcctcttc |
221 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||||||||||||||| || || ||| |||||| ||| |||| |||||| || ||||| |
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|
| T |
30054498 |
caaaacctgaagagtatcagaagagacagtcaatgatttgatattagaaaactgtagtagccagttgagtaggactgcagattcgtcttc |
30054587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 44500709 - 44500774
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagctgaat |
201 |
Q |
| |
|
|||||||||||| | | |||||| || |||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
44500709 |
acctgaagagtagttgtagagaccgtcaatgattttatgttagcaagctctagtagccagctgaat |
44500774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 36590659 - 36590720
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagct |
197 |
Q |
| |
|
|||||||||||| | | |||||| || |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
36590659 |
acctgaagagtactcgcagagaccgtcaatgatttgatattagcaagttctaacagccagct |
36590720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 15608 - 15668
Alignment:
| Q |
136 |
acctgaagagtattagaagagactgttaatgatttgatattagcaagctctagcagccagc |
196 |
Q |
| |
|
|||||||||||| | |||| |||||| |||||||||||||||| ||||| | |||||||| |
|
|
| T |
15608 |
acctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagc |
15668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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