View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14899_low_5 (Length: 329)

Name: NF14899_low_5
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14899_low_5
NF14899_low_5
[»] chr7 (10 HSPs)
chr7 (130-311)||(33839435-33839616)
chr7 (229-275)||(5201-5247)
chr7 (224-274)||(5061758-5061808)
chr7 (230-274)||(38386178-38386222)
chr7 (226-273)||(10527015-10527062)
chr7 (226-288)||(19365411-19365473)
chr7 (226-275)||(28138759-28138808)
chr7 (226-275)||(28139464-28139513)
chr7 (226-271)||(44552026-44552071)
chr7 (224-272)||(5729139-5729187)
[»] chr8 (7 HSPs)
chr8 (225-292)||(31762240-31762307)
chr8 (226-274)||(5967267-5967315)
chr8 (226-272)||(33228168-33228214)
chr8 (227-288)||(33228899-33228960)
chr8 (224-271)||(9418585-9418632)
chr8 (226-275)||(3588340-3588389)
chr8 (226-275)||(3588574-3588623)
[»] chr1 (7 HSPs)
chr1 (225-275)||(5602943-5602993)
chr1 (226-275)||(28474792-28474841)
chr1 (223-275)||(28446559-28446611)
chr1 (229-273)||(9862923-9862967)
chr1 (224-271)||(11821158-11821205)
chr1 (226-292)||(33617644-33617710)
chr1 (223-275)||(50065475-50065527)
[»] chr5 (14 HSPs)
chr5 (225-274)||(17636343-17636392)
chr5 (224-274)||(7164779-7164829)
chr5 (226-288)||(28677886-28677948)
chr5 (226-275)||(34016002-34016051)
chr5 (224-275)||(40266617-40266669)
chr5 (232-275)||(6706064-6706107)
chr5 (225-275)||(25759839-25759889)
chr5 (225-275)||(25787870-25787920)
chr5 (226-275)||(759160-759209)
chr5 (226-275)||(6636931-6636980)
chr5 (226-275)||(11135741-11135790)
chr5 (224-273)||(17644631-17644680)
chr5 (225-273)||(6158973-6159021)
chr5 (227-275)||(7335534-7335582)
[»] chr3 (10 HSPs)
chr3 (226-275)||(15040681-15040730)
chr3 (226-274)||(53814591-53814639)
chr3 (224-274)||(3539666-3539716)
chr3 (225-290)||(54525801-54525866)
chr3 (226-274)||(26998317-26998365)
chr3 (224-271)||(3860244-3860291)
chr3 (224-275)||(40517552-40517603)
chr3 (222-275)||(35069475-35069528)
chr3 (226-271)||(44430418-44430463)
chr3 (227-271)||(13843626-13843670)
[»] chr2 (4 HSPs)
chr2 (226-275)||(8273245-8273294)
chr2 (226-275)||(22788014-22788063)
chr2 (225-275)||(25389879-25389929)
chr2 (232-273)||(38147103-38147144)
[»] chr6 (6 HSPs)
chr6 (225-273)||(807200-807248)
chr6 (226-288)||(17436557-17436619)
chr6 (226-275)||(24326944-24326993)
chr6 (225-292)||(32275783-32275850)
chr6 (225-275)||(31522564-31522614)
chr6 (242-274)||(32274200-32274232)
[»] chr4 (6 HSPs)
chr4 (229-275)||(24974175-24974221)
chr4 (226-274)||(54208180-54208228)
chr4 (226-273)||(38676939-38676986)
chr4 (225-287)||(35429449-35429511)
chr4 (229-274)||(36501895-36501940)
chr4 (227-275)||(27992116-27992164)
[»] scaffold1763 (1 HSPs)
scaffold1763 (226-271)||(397-442)
[»] scaffold0246 (1 HSPs)
scaffold0246 (226-271)||(2886-2931)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 130 - 311
Target Start/End: Complemental strand, 33839616 - 33839435
Alignment:
Q  130 gaaggataaattttagttatataattaaggcatggttaactaaactattttgtggttgatggttgaaaaatgaaaaccaaaccaannnnnnn--ggatga 227  Q
    |||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||         ||||||    
T  33839616 gaaggataaattttagttata--attaaggcatggttaaccaaaccattttgtggttgagggttgaaaaatgaaaaccaaaccaatttttttttggatga 33839519  T
Q  228 attctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccctatgcagcgtgagttaactcatgct 311  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||| ||| ||||||||||| |||||    
T  33839518 attctgctctttatccaaatggattcgctcattctcaaagtaaatgacggatatactcctatacagtgtgagttaactgatgct 33839435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 5247 - 5201
Alignment:
Q  229 ttctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgac 5201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 5061808 - 5061758
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||||||| ||| |||||||||||| |||||| |||||||||||||    
T  5061808 atgaattctgctcattacccaaatggattcactcatttccaaaataaatga 5061758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 38386178 - 38386222
Alignment:
Q  230 tctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatga 38386222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 10527062 - 10527015
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    ||||||||||||||| ||||||||||||  ||||||||||| ||||||    
T  10527062 gaattctgctctttacccaaatggattcaatcattcccaaagtaaatg 10527015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 19365473 - 19365411
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatcccta 288  Q
    ||||||||||| ||| | |||||||||||||||||||||||  ||||||| || ||| |||||    
T  19365473 gaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaataccccta 19365411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 28138759 - 28138808
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||||||| |||||||  || ||||||||||||| ||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgac 28138808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 28139513 - 28139464
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||| |||| ||||||||||| || |||||||||| ||||||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgac 28139464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 44552026 - 44552071
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||||||||| |||||||||||| |||||||||||  ||||||||    
T  44552026 gaattctgctcattatccaaatggtttcgctcattcttaaaataaa 44552071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 5729187 - 5729139
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaat 272  Q
    |||||||||||||||||  ||||||| |||| ||||||| |||||||||    
T  5729187 atgaattctgctctttactcaaatggtttcgttcattcctaaaataaat 5729139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 31762240 - 31762307
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccctatgca 292  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||| |  || |||||||||||||    
T  31762240 tgaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgca 31762307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 5967315 - 5967267
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 5967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 33228168 - 33228214
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaat 272  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||    
T  33228168 gaattctgctctttatccaaatggattcaatcattcccaaagtaaat 33228214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 33228960 - 33228899
Alignment:
Q  227 aattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatcccta 288  Q
    |||| |||||||||  |||||||||| ||||||| ||||| ||||||||||||||| |||||    
T  33228960 aattatgctctttactcaaatggatttgctcatttccaaagtaaatgacggatataccccta 33228899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 9418585 - 9418632
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||||||||||| ||| |||||||| |||||||||||||||| ||||    
T  9418585 atgaattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 3588340 - 3588389
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||||||||||| |||||| | |||||| |||| ||||||||    
T  3588340 gaattctgctctttatccaattggatttgatcattctcaaagtaaatgac 3588389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 3588623 - 3588574
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||| ||||||| ||||||| ||| ||||||||||||| ||||||||    
T  3588623 gaattctactctttacccaaatgaatttgctcattcccaaattaaatgac 3588574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 5602943 - 5602993
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  5602943 tgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgac 5602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 28474792 - 28474841
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgac 28474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 28446611 - 28446559
Alignment:
Q  223 gatgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||    
T  28446611 gatgaattttgctcattacccaaatggattcgctcattcccaaagtaaatgac 28446559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 9862967 - 9862923
Alignment:
Q  229 ttctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    |||||||||||| |||||||  |||||||||||||||||||||||    
T  9862967 ttctgctctttacccaaatgatttcgctcattcccaaaataaatg 9862923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 11821158 - 11821205
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||||||||||| |||||||||||| |||| ||||||||||| ||||    
T  11821158 atgaattctgctcattatccaaatggtttcgttcattcccaaagtaaa 11821205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 33617644 - 33617710
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccctatgca 292  Q
    ||||| ||||| ||| |||||||||||||||||||| |||| |||||||| || ||  |||||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgca 33617710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 50065475 - 50065527
Alignment:
Q  223 gatgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||| ||| ||| | ||||||| ||||||||||||||| ||||||||    
T  50065475 gatgaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgac 50065527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 17636343 - 17636392
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||||    
T  17636343 tgaattctgctcattacctaaatggattcgctcattcccaaaataaatga 17636392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 7164829 - 7164779
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||| |||||||  ||||||||||||||||||| ||||||||||||    
T  7164829 atgaattctactctttactcaaatggattcgctcattctcaaaataaatga 7164779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 28677886 - 28677948
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatcccta 288  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| |||||||| || ||| |||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaataccccta 28677948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 34016002 - 34016051
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||| | ||||||||||||||||||||||| ||||||||    
T  34016002 gaattctgctcattacctaaatggattcgctcattcccaaagtaaatgac 34016051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 40266669 - 40266617
Alignment:
Q  224 atgaattctgctcttt-atccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| ||||||||    
T  40266669 atgaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgac 40266617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 6706107 - 6706064
Alignment:
Q  232 tgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||    
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgac 6706064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 25759839 - 25759889
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||||||||||||| ||||  ||||||||| ||| ||||||||    
T  25759839 tgaattctgctctttatccaaacggatctgctcattcctaaagtaaatgac 25759889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 25787920 - 25787870
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||||||||||||| || |  ||||||| ||||||||||||||    
T  25787920 tgaattctgctctttatccaaacggttatgctcatttccaaaataaatgac 25787870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 759160 - 759209
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||| | ||||||||||| ||||||||||| ||||||||    
T  759160 gaattctgctcattacctaaatggattcgatcattcccaaagtaaatgac 759209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 6636980 - 6636931
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||||||||||| ||  | ||||||||||||||||||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgac 6636931  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 11135741 - 11135790
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||| ||||||||| |||||||  |||||||||| ||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgac 11135790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 17644680 - 17644631
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| ||||||    
T  17644680 atgaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatg 17644631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 6159021 - 6158973
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    |||||||||||| |||   ||||||||||||||||||||||| ||||||    
T  6159021 tgaattctgctcattacttaaatggattcgctcattcccaaagtaaatg 6158973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 7335534 - 7335582
Alignment:
Q  227 aattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||| |||||||||| || || ||||||||| ||||||||||||    
T  7335534 aattctgctttttatccaaacggttttgctcattcctaaaataaatgac 7335582  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 15040681 - 15040730
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgac 15040730  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 53814639 - 53814591
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatga 53814591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 3539666 - 3539716
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||||||||    
T  3539666 atgaattatgctctttatccaaatggttttgctcatttccaaaataaatga 3539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 54525801 - 54525866
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccctatg 290  Q
    |||||| ||||||||| | |||| |||||||||||| ||||| |||||||| || |||||||||||    
T  54525801 tgaattatgctctttacctaaattgattcgctcatttccaaagtaaatgactgaaatatccctatg 54525866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 26998365 - 26998317
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||||||| |||||||||| |||||||||| | |||||||||||    
T  26998365 gaattctgctcttcatccaaatggtttcgctcatttctaaaataaatga 26998317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Original strand, 3860244 - 3860291
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    |||||||||| || |||||||||||| ||||||||||| |||||||||    
T  3860244 atgaattctgttcattatccaaatggtttcgctcattctcaaaataaa 3860291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 40517603 - 40517552
Alignment:
Q  224 atgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||||||||| ||||| || |||||||||||| ||| ||||||||    
T  40517603 atgaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgac 40517552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 35069528 - 35069475
Alignment:
Q  222 ggatgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||||||| ||||| ||||||||||| ||||| | ||| ||||||||    
T  35069528 ggatgaattctgctcattatctaaatggattcgttcatttctaaagtaaatgac 35069475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 44430418 - 44430463
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||||||||| |||||||||||| || ||||||||||||| ||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  227 aattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    |||||||||| ||| |||||||| |||||||||||||||| ||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 8273245 - 8273294
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgac 8273294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 22788063 - 22788014
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||||||| ||||||||||| | ||||||||||| ||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgac 22788014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 25389929 - 25389879
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||||||||  |||||||||| |||||||| |||| ||||||||    
T  25389929 tgaattctgctctttactcaaatggatttgctcattctcaaagtaaatgac 25389879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 38147144 - 38147103
Alignment:
Q  232 tgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  38147144 tgctctttacccaaatggattcgctcattcctaaagtaaatg 38147103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 807248 - 807200
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  807248 tgaattctgctctttatccaaatagattcgctcattcctaaagtaaatg 807200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 17436619 - 17436557
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatcccta 288  Q
    ||||||||||| ||| |||||||||||||||| |||||||| |||||||| || || ||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtcccta 17436557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 24326944 - 24326993
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    ||||||||||| |||  |||||| ||||||||||||||||||||||||||    
T  24326944 gaattctgctcattactcaaatgaattcgctcattcccaaaataaatgac 24326993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 32275850 - 32275783
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccctatgca 292  Q
    |||||| ||||| |||||||||||| | |||||||||||||| |||||||| || ||  |||||||||    
T  32275850 tgaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgca 32275783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 31522614 - 31522564
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||||||| ||| |||||||| | |||||||||||||| ||||||||    
T  31522614 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgac 31522564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 32274200 - 32274232
Alignment:
Q  242 ccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||||||||||||||||||||||| |||||||    
T  32274200 ccaaatggattcgctcattcccaaagtaaatga 32274232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 24974221 - 24974175
Alignment:
Q  229 ttctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgac 24974175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 54208180 - 54208228
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    ||||| |||||||||||||||||| || ||||||||||||| |||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatga 54208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 38676939 - 38676986
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaatg 273  Q
    ||||||| ||||||||||||| || || ||||||||||||||||||||    
T  38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatg 38676986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 35429511 - 35429449
Alignment:
Q  225 tgaattctgctctttatccaaatggattcgctcattcccaaaataaatgacggatatatccct 287  Q
    ||||| |||||| ||| ||||||   |||||||||||||||||||||||| ||||||| ||||    
T  35429511 tgaatactgctcattacccaaatcatttcgctcattcccaaaataaatgatggatatacccct 35429449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 36501940 - 36501895
Alignment:
Q  229 ttctgctctttatccaaatggattcgctcattcccaaaataaatga 274  Q
    |||||||| ||| ||| ||||||||||||||||||||| |||||||    
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatga 36501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 27992116 - 27992164
Alignment:
Q  227 aattctgctctttatccaaatggattcgctcattcccaaaataaatgac 275  Q
    |||| ||||| |||| |||||||||| ||||||||||||| ||||||||    
T  27992116 aattatgctcattattcaaatggatttgctcattcccaaagtaaatgac 27992164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 442 - 397
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||| ||||||||| |||||||| |||||||||||||||| ||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 2931 - 2886
Alignment:
Q  226 gaattctgctctttatccaaatggattcgctcattcccaaaataaa 271  Q
    ||||||||||| ||| |||||||| ||||||||||| |||||||||    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaa 2886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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