View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14899_low_6 (Length: 257)
Name: NF14899_low_6
Description: NF14899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14899_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30577135 - 30577375
Alignment:
| Q |
1 |
taaaaacagatcattcaccattgttgttacaagttacagcatcaatatgaaccttgtaacacctggtttttaccaaaaactaaagcggaagttaacctgc |
100 |
Q |
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| T |
30577135 |
taaaaacagatcattcatcattgttgttacaagttacagcatctatatgaaccttgtaacacctggtttttaccaaaaactaaagcggaagttaacctgc |
30577234 |
T |
|
| Q |
101 |
tgcgtagtccaatttcctttacaagagacagtcaaaacaaataaaagattgtacggtcgttttaaaattcaaaataacaagttataactagaaatcatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30577235 |
tgcgtagtccaatttcctttacaagagacagtcaaaacaaataaaagattggacggtcgttttaaaattcaaaataacaagttataactagaaatcatca |
30577334 |
T |
|
| Q |
201 |
cacctagtttactcttgtagtatacctctagaaatcatttc |
241 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
30577335 |
cacctagtttactcttatagtagacctctagaaatcatttc |
30577375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 29949391 - 29949445
Alignment:
| Q |
156 |
gtcgttttaaaattcaaaataacaagttataactagaaatcatcacacctagttt |
210 |
Q |
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|||||||| |||||||||||||||| || ||||| |||| |||| |||||||||| |
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| T |
29949391 |
gtcgttttgaaattcaaaataacaaattttaacttgaaagcatctcacctagttt |
29949445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 29953188 - 29953242
Alignment:
| Q |
156 |
gtcgttttaaaattcaaaataacaagttataactagaaatcatcacacctagttt |
210 |
Q |
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| T |
29953188 |
gtcgttttgaaattcaaaataacaaattttaacttgaaagcatctcacctagttt |
29953242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 210
Target Start/End: Complemental strand, 9783168 - 9782999
Alignment:
| Q |
44 |
aatatgaaccttgtaacacctggtttttaccaaaaactaaagcggaagttaacctgctgcgtagtccaatttcctttacaag----agacagtcaaaaca |
139 |
Q |
| |
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|||||||||||| ||||| || ||||||||||||||||||| | ||||| | | |||| ||||||||||||||| ||| || |||| ||| || |
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| T |
9783168 |
aatatgaaccttacaacacatgacttttaccaaaaactaaagctgtagttagcttcctgcagagtccaatttcctttttaagtggcaggcagtaaaagca |
9783069 |
T |
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| Q |
140 |
aataaaagattgtacggtcgttttaaaattcaaaataacaagttataactagaaatcatcacacctagttt |
210 |
Q |
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||| ||| |||| ||| | ||||||||||||| |||||||| | |||| |||| |||| |||||||||| |
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| T |
9783068 |
aat-aaatattggacgcttgttttaaaattcacaataacaaactgtaaccggaaagcatctcacctagttt |
9782999 |
T |
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