View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1489_high_3 (Length: 272)
Name: NF1489_high_3
Description: NF1489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1489_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 37591305 - 37591547
Alignment:
| Q |
16 |
atcacaaaagttttatcttaagaacctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgttgc |
115 |
Q |
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| T |
37591305 |
atcacaaaagttttatcgtaagaacctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgttgc |
37591404 |
T |
|
| Q |
116 |
aaaaccaactttttatttaccttgaataccccaaataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaattaccc |
215 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37591405 |
aaaaccaactttttattgaccttgaataccctaaataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaattaccc |
37591504 |
T |
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| Q |
216 |
cctttcgtccaacgaattcggcaataggtccactagttattgc |
258 |
Q |
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| T |
37591505 |
cctttcgtccaacgaattcggcaataggtccactagttattgc |
37591547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 37585269 - 37585025
Alignment:
| Q |
13 |
aatatcacaaaagttttatcttaagaacctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgt |
112 |
Q |
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||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| ||| | |
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| T |
37585269 |
aatatcacaaaagttttgtagtaagaacctgagaaaagtaaataacaagccaccctacaatacagaaacagcttgacactctcattgcctgcatttatat |
37585170 |
T |
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| Q |
113 |
tgcaaaaccaactttttatttaccttgaataccccaaataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaatta |
212 |
Q |
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| T |
37585169 |
tgcaaaactaactttttatttatcttgaatacaccaaat-aaaataattaacaatttggaggttaatccctgaacgaccataataattttcctgaattta |
37585071 |
T |
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| Q |
213 |
ccccctttcgtccaacgaattcggcaataggtccactagttattgc |
258 |
Q |
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| T |
37585070 |
ctccctttcgtccaacgaaatcggcaataggtccacttgttattgc |
37585025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 258
Target Start/End: Complemental strand, 37462786 - 37462571
Alignment:
| Q |
39 |
acctcagaaaagtaaataacaagccaccctgcaatactgaaagcgcttgacactctcattgcctgcatatatgttgcaaaaccaactttttatttacctt |
138 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||| ||||||||| | |
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| T |
37462786 |
acctcagaaaagtaaataacaagccaccctgcaatacaaaaagcacttgacactctcattgcctgcatatatattccaaaacaaacttttta-------t |
37462694 |
T |
|
| Q |
139 |
gaatacccca---aataaaaataattaaacatttggaagttaattccaaaacaaccatcataattttccagaaattaccccctttcgtccaacgaattcg |
235 |
Q |
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||||| ||| |||||| || ||||| ||| ||||||||||||||||| ||| | ||| |||||| |||||||||||||||| ||||||||| || |
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| T |
37462693 |
gaatattccacataataaagatgattaacaattcggaagttaattccaaaataactagcatcgttttcctgaaattaccccctttcttccaacgaaatca |
37462594 |
T |
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| Q |
236 |
gcaataggtccactagttattgc |
258 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
37462593 |
gcaataggtccacttgttattgc |
37462571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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