View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1489_low_2 (Length: 355)

Name: NF1489_low_2
Description: NF1489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1489_low_2
NF1489_low_2
[»] chr7 (7 HSPs)
chr7 (19-319)||(17970975-17971266)
chr7 (19-176)||(17976745-17976902)
chr7 (198-319)||(16985130-16985251)
chr7 (193-255)||(17976910-17976972)
chr7 (233-265)||(11466938-11466970)
chr7 (233-265)||(19138812-19138844)
chr7 (233-265)||(20738211-20738243)
[»] chr3 (1 HSPs)
chr3 (193-265)||(8839619-8839692)
[»] chr1 (3 HSPs)
chr1 (196-270)||(26471698-26471773)
chr1 (230-265)||(19884055-19884090)
chr1 (233-265)||(31318437-31318469)
[»] chr6 (1 HSPs)
chr6 (193-284)||(11076924-11077016)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 17970975 - 17971266
Alignment:
Q  19 aatatataatgtttgtggtctatattataaaccattattattctaagaatccttatcgccgtctaacctattaaacaaactattttgctttgattcaaac 118  Q
    |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  17970975 aataaataatgtatgtggtctatattataaaccattattattcgaagaatccttatcactgtctaacctattaaacaaactattttgcttttattcaaac 17971074  T
Q  119 tattattcgcaatgatcacacaattcaaaagttcaaccccttaaaacccattaattgcnnnnnnnnnnnnnnaaagtttaaataggtatagcgaattgct 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||                ||||||||||| ||||||||||||||    
T  17971075 tattattcgcaatgagcacacaattcaaaagttcaaccccttaaaccccattaattgcttttttt---------agtttaaatagatatagcgaattgct 17971165  T
Q  219 tagttgacgacattcatgtggagacaataacttactactttattactcgttaagttttgtgcactttcaaatcatgtcatcattatcattaaaacataat 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17971166 tagttgacgatattcatgtggagacaataacttactactttattacttgttaagttttttgcactttcaaatcatgtcatcattatcattaaaacataat 17971265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 17976745 - 17976902
Alignment:
Q  19 aatatataatgtttgtggtctatattataaaccattattattctaagaatccttatcgccgtctaacctattaaacaaactattttgctttgattcaaac 118  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  17976745 aataaataatgtatgtgatctatattataaaccattattattcgaagaatccttatcgccatctaacctattaaacaaactattctgcttttattcaaac 17976844  T
Q  119 tattattcgcaatgatcacacaattcaaaagttcaaccccttaaaacccattaattgc 176  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  17976845 tattattcgcaatgagcacacaattcaaaagttcaaccccttaaaccccattaattgc 17976902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 16985130 - 16985251
Alignment:
Q  198 aaataggtatagcgaattgcttagttgacgacattcatgtggagacaataacttactactttattactcgttaagttttgtgcactttcaaatcatgtca 297  Q
    |||||||||||| ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| || |  |||| |||| |||||||||| ||   |||||    
T  16985130 aaataggtatagtgaatttcttagttgatgacattcatgtagagacgataacttactactttgttccatgttaggtttggtgcactttctaaatttgtca 16985229  T
Q  298 tcattatcattaaaacataata 319  Q
    |||||||| |||||||||||||    
T  16985230 tcattatctttaaaacataata 16985251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17976910 - 17976972
Alignment:
Q  193 agtttaaataggtatagcgaattgcttagttgacgacattcatgtggagacaataacttacta 255  Q
    ||||||||||| ||||| |||||||||| |||| | |||||| |||||||  |||||||||||    
T  17976910 agtttaaatagatatagtgaattgcttatttgatggcattcacgtggagaggataacttacta 17976972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 11466970 - 11466938
Alignment:
Q  233 catgtggagacaataacttactactttattact 265  Q
    ||||||||||||||||| |||||||||||||||    
T  11466970 catgtggagacaataacctactactttattact 11466938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 19138844 - 19138812
Alignment:
Q  233 catgtggagacaataacttactactttattact 265  Q
    |||||||||||||||| ||||||||||||||||    
T  19138844 catgtggagacaataatttactactttattact 19138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 20738243 - 20738211
Alignment:
Q  233 catgtggagacaataacttactactttattact 265  Q
    |||||||||||||||| ||||||||||||||||    
T  20738243 catgtggagacaataatttactactttattact 20738211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 8839619 - 8839692
Alignment:
Q  193 agtttaaataggtatagcgaattgcttagttgacgacattc-atgtggagacaataacttactactttattact 265  Q
    ||||||||||| |||||| |||||||| |||||||||| || |||| ||||| |||||||||||||||||||||    
T  8839619 agtttaaatagatatagcaaattgcttcgttgacgacaatcaatgtagagacgataacttactactttattact 8839692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 26471773 - 26471698
Alignment:
Q  196 ttaaataggtatagcgaattgcttagttgacgacattc-atgtggagacaataacttactactttattactcgtta 270  Q
    ||||||||||||||| || |||||  ||||||||| || ||||||| |||||||||||| ||||||||||| ||||    
T  26471773 ttaaataggtatagcaaaatgcttcattgacgacaatccatgtggaaacaataacttaccactttattactagtta 26471698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 19884055 - 19884090
Alignment:
Q  230 attcatgtggagacaataacttactactttattact 265  Q
    |||||||||||||| |||||||||||||||||||||    
T  19884055 attcatgtggagacgataacttactactttattact 19884090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 31318469 - 31318437
Alignment:
Q  233 catgtggagacaataacttactactttattact 265  Q
    ||||||||||| |||||||||||||||||||||    
T  31318469 catgtggagacgataacttactactttattact 31318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 11076924 - 11077016
Alignment:
Q  193 agtttaaataggtatagcgaattgcttagttgacgacattcatgtggagacaataacttactactttattactcgtta-agttttgtgcactt 284  Q
    |||| |||||| ||||| ||||| |||||||| ||  || | | ||||||||||||||||||||||| ||||| |||| ||||| ||||||||    
T  11076924 agttcaaatagatatagagaatttcttagttggcgcgatccttatggagacaataacttactacttttttacttgttacagtttggtgcactt 11077016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University