View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1489_low_4 (Length: 275)
Name: NF1489_low_4
Description: NF1489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1489_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 5949128 - 5948865
Alignment:
| Q |
1 |
aagataacataaacataaactgcatatactactatactgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataatta--- |
97 |
Q |
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| T |
5949128 |
aagataacataaacataaactgcatatactactaaactgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataattatta |
5949029 |
T |
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| Q |
98 |
gttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaa |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5949028 |
gttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccgtctttattggcatcagctttcatcaaacaa |
5948929 |
T |
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| Q |
198 |
cgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttct |
261 |
Q |
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| T |
5948928 |
cgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttct |
5948865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 253
Target Start/End: Complemental strand, 5954770 - 5954520
Alignment:
| Q |
5 |
taacataaacataaactgcatata--ctactata--ctgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataattagtt |
100 |
Q |
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| T |
5954770 |
taacataaacacaaactgcatatatactactatatactgcattaaagctattagcatgatttgattattgatcatatatcacctctta--ataattagtt |
5954673 |
T |
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| Q |
101 |
cttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacga |
200 |
Q |
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| T |
5954672 |
cttgccaaaaccacgggtaaggagataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatcagctttcatgaaacaaaat |
5954573 |
T |
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| Q |
201 |
ttggctctccatccagggtagtaagaacctaaatcctttagagcttttttgag |
253 |
Q |
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| T |
5954572 |
atggctctcaatccagggtagtaagaacctaaatcctttagagcttttttgag |
5954520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 5937836 - 5937685
Alignment:
| Q |
99 |
ttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaac |
198 |
Q |
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| T |
5937836 |
ttctttccaaaaccacgggtaaggagataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagctttaaccaaacaac |
5937737 |
T |
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| Q |
199 |
gattggctctccatccagggtagtaagaacctaaatcctttagagctttttt |
250 |
Q |
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| T |
5937736 |
gattggccctccatccaggatagtaagaacctaaatcttttagagctttttt |
5937685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 5960894 - 5960800
Alignment:
| Q |
123 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacgattggctctccatccagg |
217 |
Q |
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||||||||||||||||| || |||||||| ||||| ||| ||||||| || ||||||||| | || | || |||||| |||||||||||||||| |
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| T |
5960894 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaacattgaccatacaacgcatggctctccatccagg |
5960800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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