View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1489_low_6 (Length: 269)
Name: NF1489_low_6
Description: NF1489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1489_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 33384887 - 33385119
Alignment:
| Q |
20 |
attttcccattgtatgcagctggattattgacttcatttctgttgaagttgaaaaatgatggatttcaacatgattcatcttgggagaacatgaaatctt |
119 |
Q |
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| T |
33384887 |
attttcccattgtatgcagctggattattgacttcatttctgttgaagttgaaaaatgatggatttcaacatgattcatcttgggagaacatgaaatctt |
33384986 |
T |
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| Q |
120 |
atggcggtttggtactggatggctttcttgtgccacaagtaattctaaacttgttttcaaatatgaatgagaatgttctttcatgttcattttactttgg |
219 |
Q |
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| T |
33384987 |
atggcggtttggtattggatggctttcttgtgccacaagtaattctaaacttgttttcaaatatgaatgagaatgttctttcatgttcattttactttgg |
33385086 |
T |
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| Q |
220 |
aactacttttgtgagactcttgccgcatgccta |
252 |
Q |
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| T |
33385087 |
aactacttttgtgagactcttgccgcatgccta |
33385119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 33378845 - 33379008
Alignment:
| Q |
86 |
caacatgattcatcttgggagaacatgaaatcttatggcggtttggtactggatggctttcttgtgccacaagtaattctaaacttgttttcaaatatga |
185 |
Q |
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| T |
33378845 |
caacatgatccgtcttgggagagcataaaatcttatggtggtttggtattggattgctttcttgtgccacaagtcattctaaacttgttttcaaatatga |
33378944 |
T |
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| Q |
186 |
atgagaatgttctttcatgttcattttactttggaactacttttgtgagactcttgccgcatgc |
249 |
Q |
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| T |
33378945 |
atgagaatgttctttcatgctcattttactttggaactacttttgtgagactcttgccacatgc |
33379008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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