View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14900_high_1 (Length: 548)
Name: NF14900_high_1
Description: NF14900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14900_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 14 - 529
Target Start/End: Original strand, 35975909 - 35976416
Alignment:
| Q |
14 |
gcacagacagcagcacttggcacaaggaaattcgttccattctgccttacaaaatgtcacagatgagattgttagaacaccaagggattccgctaagttg |
113 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
35975909 |
gcacagacagaagcacttggcacaaggaaattcgtatcattctgccttacaaaatgtcatagatgagattgttagaacaccaagagattccgctaagttg |
35976008 |
T |
|
| Q |
114 |
gttaatgatcaaaatagacctatcttaggaacaaattatggccacgccattgacaaacaattccattggtaacactcatccatcgccctccgtcccggaa |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
35976009 |
gttaatgatcaaaatagacctatctt-ggaacaaattatggccacgccattgacaaacaattccattggtagcacccatccatcgccctccgtcccggaa |
35976107 |
T |
|
| Q |
214 |
acacaagtggttgtgggaaagagtagtgactttcgccctgttctacaaaatgatttgaatttggtgcgtcacattttggttcagcaaaatgatgatgata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35976108 |
acacaagtggttgtgggaaagagtagtgaattttgccccgttctacaaaatgatttgaatttggtgcgtcacattttggttcagcaaaatgatgatgata |
35976207 |
T |
|
| Q |
314 |
acacgcctttcattacttattttatttgtcaaagaaacagaaaaagaaacttaacaggtctacttataatacccggtctaagggtgatcttccaaataat |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35976208 |
acacgcctttcattac-----ttatttgtcaaagaaacagaaaaagaaacataacaggtctacttataatacccggtctaagggtga--ttccaaataat |
35976300 |
T |
|
| Q |
414 |
cctcaatgaagattcttgactggaacatccaaggtattggtaattcggattcccatattgccttgaaagattttttctttaatcataggccgttgttgat |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35976301 |
cctcaatgaagattcttgactggaacatccaaggtattggtaattcggattcccgtattgccttgaaagattttttctttaatcataggccgttgttgat |
35976400 |
T |
|
| Q |
514 |
gtttgtggctgaacca |
529 |
Q |
| |
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|||||||||||||||| |
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| T |
35976401 |
gtttgtggctgaacca |
35976416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 529
Target Start/End: Complemental strand, 34377699 - 34377224
Alignment:
| Q |
14 |
gcacagacagcagcacttggcacaaggaaattcgttccattctgccttacaaaatgtcacagatgagattgttagaacaccaagggattccgctaagttg |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34377699 |
gcacagacagcagcacttggcacaaggaaattcgttccattctgccttacaaaatgtcacggatgagattgttagaacaccaagggattccgctgagttg |
34377600 |
T |
|
| Q |
114 |
gttaatgatcaaaatagacctatcttaggaacaaattatggccacgccattgacaaacaattccattggtaacactcatccatcgccctccgtcccggaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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|
| T |
34377599 |
gttaatgatcaaaatagacctatctt-ggaacaaattatggccacaccattgacaaacaattccattggtagcactcattcatcggcctccgtcccggaa |
34377501 |
T |
|
| Q |
214 |
acacaagtggttgtgggaaagagtagtgactttcgccctgttctacaaaatgatttgaatttggtgcgtcacattttggttcagcaaaatgatgatgata |
313 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
34377500 |
acacaagtggttgtgggaaagagtaatgacttttgccc---------------tttgaatttggtgcgtcacattttggtttagcaaaatgatgatgata |
34377416 |
T |
|
| Q |
314 |
acacgcctttcattacttattttatttgtcaaagaaacagaaaaagaaacttaacaggtctacttataatacccggtctaagggtgatcttccaaataat |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
34377415 |
acacgcctttcattac-----ttatttgtcaaagaaacagaaaaagaaac-------------------tccccggtctaagggtgatcttccaaataat |
34377340 |
T |
|
| Q |
414 |
cctcaatgaagattcttgactggaacatccaaggtattggtaattcggattcccatattgccttgaaagattttttctttaatcataggccgttgttgat |
513 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34377339 |
cctcaaagaagattctttactggaacatccaaggtattggtaattcggattcccgtattcccttgaaagattttttctttaatcataggccgttgttgat |
34377240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 15 - 529
Target Start/End: Complemental strand, 12879734 - 12879236
Alignment:
| Q |
15 |
cacagacagcagcacttggcacaaggaaattcgttccattctgccttacaaaatgtcacagatgagattgttagaacaccaagggattccgctaagttgg |
114 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| || |||||| | |||||| |
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|
| T |
12879734 |
cacagacagcaacacttggaacaaggaaattcgttcctttctaccttacaaaatgtcacggatgagattgttagaacaccatggaattccgttgagttgg |
12879635 |
T |
|
| Q |
115 |
ttaatgatcaaaatagacctatcttaggaacaaattatggccacgccattgacaaacaattccattggtaacactcatccatcgccctccgtcccggaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
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|
| T |
12879634 |
ttaatgatcaaaatagacctatctt-ggaacaaattatggccacgacattgacaaacaattccattggtaacactcattcatcgcccgttgtcccgaaaa |
12879536 |
T |
|
| Q |
215 |
cacaagtggttgtgggaaagagtagtgactttcgccctgttctacaaaatgatttgaatttggtgcgtcacattttggttcagcaaaatgatgatgataa |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
12879535 |
cacaagtggttatgggaaagagtagtgacttttgccctgttctacaaaatgatttgaatttggtgcatcacattttggttcagcaaaa------tgataa |
12879442 |
T |
|
| Q |
315 |
cacgcctttcattacttattttatttgtcaaagaaacagaaaaagaaacttaacaggtctacttataatacccggtctaagggtgatcttccaaataatc |
414 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||| |||||||| |
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|
| T |
12879441 |
cacgcctttcattac-----ttatttgtcaaagaaacagaaaaagaaacttaacaagtctgcttataatactcggtctaagggtaatcttctaaataatc |
12879347 |
T |
|
| Q |
415 |
ctcaatgaagattcttgactggaacatccaaggtattggtaattcggattcccatattgccttgaaaga-ttttttctttaatcataggccgttgttgat |
513 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||| |||||| |
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|
| T |
12879346 |
ctcaatgaagattctttactggaacatccaaagtat--gtaattcggattcccgtattgcctgtaaagatttttttctttattcatacgcc---gttgat |
12879252 |
T |
|
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