View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14900_high_3 (Length: 320)
Name: NF14900_high_3
Description: NF14900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14900_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 115 - 318
Target Start/End: Original strand, 35590455 - 35590658
Alignment:
| Q |
115 |
atattatcttattttctgcaaattgaaaagtagttttgttaatccatatagattgattgatgtatgtttagattaatttattgaagagggtacaaaatta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35590455 |
atattatcttattttctgcaaattgaaatgtagttttgttaatccatatagattgattgatgtatgtttagattaatttattgaagagggtacaaaatta |
35590554 |
T |
|
| Q |
215 |
attgacaaaaagaaaagtaattaatacaaccttaatatgtaaaatttttggaagaaaaacaccacaccaagattatatatccattttatatatactaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35590555 |
attgacaaaaagaaaagtaattaatacaaccttaatatgtaaaaaatttggaagaaaaacaccacaccaaaattatatatccattttatatatactaacg |
35590654 |
T |
|
| Q |
315 |
tgtc |
318 |
Q |
| |
|
|||| |
|
|
| T |
35590655 |
tgtc |
35590658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35590341 - 35590381
Alignment:
| Q |
1 |
ctttctctgattagaactcacaagtcataacacactcttca |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35590341 |
ctttctctgattagaactcacaagtcataacacactcttca |
35590381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University