View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14900_low_2 (Length: 456)
Name: NF14900_low_2
Description: NF14900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14900_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 27668695 - 27669145
Alignment:
| Q |
18 |
ggaattaaatgtcaaggatgtaattttttagtcggatgccaagttcgtggttgatagttcccattcttcttcggttgtttgtttt-ctgagtttagcact |
116 |
Q |
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| T |
27668695 |
ggaattaaatgtcaaggatgtaattttttagtcggatgccaagttcgtggttgatagttcccattcttcttcggttgtttgtttttctgagtttagcact |
27668794 |
T |
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| Q |
117 |
attttagaggattttaaaatctcgcttagtcattattttaaaaattcttatattgattctctaata------gagaaacaaatgtggtagct-------- |
202 |
Q |
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| T |
27668795 |
attttagaggattttaaaatctcgcttagtcattattttaaaaattcttatattgattctctaatactaattgagaaacaaatgtggtcgctcacacttt |
27668894 |
T |
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| Q |
203 |
-----tatagtcctatatgtatggaaccttttattattgatgaaatgaaataattgttttccactaaactgtacaaagtacaaacccctcatcaatggca |
297 |
Q |
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| T |
27668895 |
tacattatagtcctatatgtatggaaccttttattattgatgaaatgaaataattgttttccacttaactgtacaaagtacaaacccctcatcaatggca |
27668994 |
T |
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| Q |
298 |
gtagtcctttctattttccttttttaacttcactctacattcacaaattaactaatgataaataagtgtgttagaattgaaagctaaattagttaaaact |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27668995 |
gtagtcctttctattttccttttttaacttcactctacattcacaaattaactaatgataaataagtgtgttagaattgaaagctaaattagttaaaact |
27669094 |
T |
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| Q |
398 |
caaagacctgctccattgatctttcaaattctcactatagctatggtctgt |
448 |
Q |
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| T |
27669095 |
caaagacctgctccattgatctttcaaattctcactatagctatggtctgt |
27669145 |
T |
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