View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14900_low_3 (Length: 430)
Name: NF14900_low_3
Description: NF14900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14900_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 51339595 - 51340006
Alignment:
| Q |
19 |
tctaggctatagctaggtcatctatcttacactattttgaaatagaatttctttctcagttcctcgtgattttccttctcagtgttgacatgtacgtttg |
118 |
Q |
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| T |
51339595 |
tctaggctatagctatgtcatctatcttacactattttgaaatagaatttctttctcagttcctcgtgattttccttctcagtgttgacatgtacgtttg |
51339694 |
T |
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| Q |
119 |
tccataagccaactttagaaattttcctcttaatttcaaaataaagttcccgttgtattctttgatctagtaccctatgacacacggggaccattctccc |
218 |
Q |
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||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51339695 |
tccattagccaacaatagaaattttcctcttgatttcaaaataaagttcccgttgtattctttgatctagtaccctatgacacacggggaccattctccc |
51339794 |
T |
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| Q |
219 |
atcccacacatgatggttagatatttcttctcaccattgtagatgattgcatacgttttacatggattcacatgatgaattgtaagtttgaagcacaaga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
51339795 |
atcccacacatgatggttagatatttcttctcaccattgtagatgattgcacacgttttacatggattcacatgatgaagtgtaagtttgaagcacaaga |
51339894 |
T |
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| Q |
319 |
tttattaaaaacaatctttgcatttgtcaaaactcgattttggcaagaccattaaagtcttgaagagtagctctagcaacactcnnnnnnnaacactctc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
51339895 |
tttattaaaaacaatctttgcatttgtcaaaactcgattttggcaagaccattaaagtcttgaagagtagttctagcaacactctttttttaacactctc |
51339994 |
T |
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| Q |
419 |
ttcacactcatt |
430 |
Q |
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| T |
51339995 |
ttcacactcatt |
51340006 |
T |
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