View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14900_low_5 (Length: 277)
Name: NF14900_low_5
Description: NF14900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14900_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 19849721 - 19849837
Alignment:
| Q |
1 |
agaagcaaaataaattgagagaaacactaacctacaatggataaagtattatcaaaactcatactacaatattgggaagctcatggacatagaccatttc |
100 |
Q |
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| T |
19849721 |
agaagcaaaataaattgagaggaagactaacctacagttgatatagtattagtaaaactcataccatagtattgggaagtttagggaggtagaccctttc |
19849820 |
T |
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| Q |
101 |
caatgagttgagccacc |
117 |
Q |
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| T |
19849821 |
aaatgaattgagccacc |
19849837 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 19850102 - 19850140
Alignment:
| Q |
172 |
catacaaatagatgaaactaaaaatgggacatgatattg |
210 |
Q |
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| T |
19850102 |
catacaaatatttgaaactaaaaatgggacatgatattg |
19850140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 19849973 - 19850018
Alignment:
| Q |
120 |
ccattaaaaatgcttttacaaacttaaaatgtcactttattttcac |
165 |
Q |
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| T |
19849973 |
ccattaaaaatgctttctcaaactaaaaatatcactttattttcac |
19850018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 19185380 - 19185344
Alignment:
| Q |
222 |
ttcgagataaaactcacattcaacagaaacaacaaca |
258 |
Q |
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| T |
19185380 |
ttcgagataaaactcacattcaacagaaacagcaaca |
19185344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 6288127 - 6288018
Alignment:
| Q |
7 |
aaaataaattgagagaaacactaacctacaatggataaagtattatcaaaactcatactacaatattgggaagctcatggacatagaccatttccaatga |
106 |
Q |
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|||||||||| |||| || |||||||||||||| ||| |||||| |||||||| |||| | |||| |||||| | || |||||| |||||||||| |
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| T |
6288127 |
aaaataaattaagaggaagactaacctacaatgaatatagtatttgtaaaactcaaactatagtatttagaagcttagggcggtagaccctttccaatga |
6288028 |
T |
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| Q |
107 |
gttgagccac |
116 |
Q |
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||||||||| |
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| T |
6288027 |
attgagccac |
6288018 |
T |
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