View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14901_high_3 (Length: 316)
Name: NF14901_high_3
Description: NF14901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14901_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 42305025 - 42305328
Alignment:
| Q |
12 |
atgaatcgagaccattttacttgcaaggcgtatgaggaacttgttagtgctaaaaagactatcaataagcttaggaaatgctgaaataactccgttacac |
111 |
Q |
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| T |
42305025 |
atgaatcaagaccattttacttgcaaggagtaagaggaacttgttagtgctaaaaagactatcaataagcttaggaaatgctgaaataactccgttacac |
42305124 |
T |
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| Q |
112 |
cttacatccattctaatctctgatccaattggtatattttttcaagtaatttccaatgttggtagtgaagaattagcacgtgaacttgaaagggttccaa |
211 |
Q |
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| T |
42305125 |
cttacatccattctaatctccaatccaattggtatactttttcaagtaatt-ccaatgttggtagtgaagaattagcacgtgaacttgaaagggttccaa |
42305223 |
T |
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| Q |
212 |
aacaagcattgaagaaattgccaactcaatcacctctagcaattatgtgtcggaaagcacttctcttgactatgccatactaagacggagattcaaccaa |
311 |
Q |
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| T |
42305224 |
aacaagcattgaagaaattgccaactcaatcacctccagcaattatgtgtcgaaaagcacttctcttgactatgccgtattaagacggagaatcaaccaa |
42305323 |
T |
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| Q |
312 |
tttag |
316 |
Q |
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| T |
42305324 |
tttag |
42305328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 46 - 283
Target Start/End: Complemental strand, 42304675 - 42304443
Alignment:
| Q |
46 |
aggaacttgttagtgctaaaaagactatcaataagcttaggaaatgctgaaataactccgttacaccttacatccattctaatctctgatccaattggta |
145 |
Q |
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| T |
42304675 |
aggaacttgttagtgctaaga-gactagcaataagtttaggacatgttgagataactcccttataccttgcatccattctaat-----atccatttggt- |
42304583 |
T |
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| Q |
146 |
tattttttcaagtaatttccaatgttggtagtgaagaattagcacgtgaacttgaaagggttc-caaaacaagcattgaagaaattgccaactcaatcac |
244 |
Q |
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| T |
42304582 |
tatttttccaagtaagttccaatgttggtggtgaagaattagcacgtgaacttgaaagggttctaaaaacaagcattgaagaaattgccaactcagtcac |
42304483 |
T |
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| Q |
245 |
ctctagca-attatgtgtcggaaagcacttctcttgacta |
283 |
Q |
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| T |
42304482 |
ctccagcagattatgtatcgaaaagcacttctcttgacta |
42304443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 45465764 - 45465916
Alignment:
| Q |
95 |
aaataactccgttacaccttacatccattctaatctctgatccaattggtatattttttcaagtaatttccaatgttggtagtgaagaattagcacgtga |
194 |
Q |
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|||| ||||| ||||||||| |||| |||||| | |||||||| | ||||| || || |||| |||||| ||||||| | ||||||||| |||||||| |
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| T |
45465764 |
aaatcactcccttacaccttgcatcaattctagtttctgatcctaacggtattttcttccaagcaatttcaaatgttgctggtgaagaatcagcacgtgc |
45465863 |
T |
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| Q |
195 |
acttgaaagggttccaaaacaagcattgaagaaattgccaactcaatcacctc |
247 |
Q |
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| T |
45465864 |
cgttgaacgtgttttgaaacaagcattaaagaaacttccatctcaatctcctc |
45465916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 10043664 - 10043741
Alignment:
| Q |
107 |
tacaccttacatccattctaatctctgatccaattggtatattttttcaagtaatttccaatgttggtagtgaagaat |
184 |
Q |
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| T |
10043664 |
tacaccttgcatccactttaatttctgatctcaatggtatatttttccaagcaatttccaatgtcggtggtgacgaat |
10043741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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