View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14901_low_1 (Length: 244)
Name: NF14901_low_1
Description: NF14901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14901_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 14462695 - 14462474
Alignment:
| Q |
6 |
aagaatatcgagggaaaattgagaaatgaaattaataaaatttggagaaaatttggtttgattattcttctaaccatttactctaatnnnnnnngtcaag |
105 |
Q |
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| T |
14462695 |
aagaaaatcgagggaaaattgagaaatgaaattaataaaatttggagaaaatttggtttgattgttcttctaaccatttactctaataaaaga-gtcaag |
14462597 |
T |
|
| Q |
106 |
cagtggatcaataaacattggatctaacatatatttgatctaaatttctataacagcaatgttatttgaacatctaaaaaacaacaactattttaacaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14462596 |
cagtggatcaataaacattggatctaacatatatttgatctaaatttctataacagcaatgttatttgaacatctaaaaagcaacaactattttaacaat |
14462497 |
T |
|
| Q |
206 |
ggatataaaaatatacaattaat |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
14462496 |
ggatataaaaatatacaattaat |
14462474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 50229787 - 50229822
Alignment:
| Q |
163 |
aatgttatttgaacatctaaaaaacaacaactattt |
198 |
Q |
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| T |
50229787 |
aatgttatttgaacatccaaaaaacaacaactattt |
50229822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 19255556 - 19255591
Alignment:
| Q |
163 |
aatgttatttgaacatctaaaaaacaacaactattt |
198 |
Q |
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| T |
19255556 |
aatgttatttgaacatctaaaaatcaacaactattt |
19255591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 42507870 - 42507904
Alignment:
| Q |
164 |
atgttatttgaacatctaaaaaacaacaactattt |
198 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
42507870 |
atgttatttgaacatctaaaaatcaacaactattt |
42507904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 34516298 - 34516265
Alignment:
| Q |
165 |
tgttatttgaacatctaaaaaacaacaactattt |
198 |
Q |
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||||||||||||||||||||| |||||||||||| |
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|
| T |
34516298 |
tgttatttgaacatctaaaaatcaacaactattt |
34516265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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