View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14902_high_3 (Length: 339)

Name: NF14902_high_3
Description: NF14902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14902_high_3
NF14902_high_3
[»] chr1 (1 HSPs)
chr1 (48-339)||(36750914-36751204)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 48 - 339
Target Start/End: Original strand, 36750914 - 36751204
Alignment:
Q  48 accatcagtagcaacttctagctccctataagtgaaaacttgcactcctcgaaatttaggtgttggtggtgtcctgctcaaatttcccccataaagacac 147  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36750914 accattagtagcaacttctagctccctataagtgaaaacttgcactcctcgaaatttaggtgttggtggtgtcctgctcaaatttcccccataaagacac 36751013  T
Q  148 ccacctttaacatctgaaatcattgtttcatactaactatttattagcttcaaaagcctcagtcatccaaacttactataaaattttaattgacgacgaa 247  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  36751014 ccacctttaacatctgaaatcattgtttcataccaactatttattagcttcaaaagcctcagtcat-ctaacttactataaaattttaattgacgacgaa 36751112  T
Q  248 aatttaaagaaattttttaaactttgctaaatatttaatggacatgaatttcaaatttcctggtctctttttgatatggaatacatctaatg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36751113 aatttaaagaaattttttaaactttgctaaatatttaatggacatgaatttcaaatttcctggtctctttttgatatggaatacatctaatg 36751204  T

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